############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark ### ############################################################################## ############################################################################## * checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK * preparing ‘SummarizedBenchmark’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown Quitting from lines 243-268 [pcaPlot] (CaseStudy-RNAseqQuantification.Rmd) Error: processing vignette 'CaseStudy-RNAseqQuantification.Rmd' failed with diagnostics: The `legend.pos` theme element is not defined in the element hierarchy. --- failed re-building ‘CaseStudy-RNAseqQuantification.Rmd’ --- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown --- finished re-building ‘CaseStudy-SingleCellSimulation.Rmd’ --- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown --- finished re-building ‘Feature-ErrorHandling.Rmd’ --- re-building ‘Feature-Iterative.Rmd’ using rmarkdown --- finished re-building ‘Feature-Iterative.Rmd’ --- re-building ‘Feature-Parallel.Rmd’ using rmarkdown --- finished re-building ‘Feature-Parallel.Rmd’ --- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ --- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ --- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’ SUMMARY: processing the following file failed: ‘CaseStudy-RNAseqQuantification.Rmd’ Error: Vignette re-building failed. Execution halted