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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL LowMACA
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’
* installing *source* package ‘LowMACA’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
Can't locate XML/Simple.pm in @INC (you may need to install the XML::Simple module) (@INC contains: ##PATH_TO##/bioperl-1.6.924 /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/site_perl/5.26.2/darwin-thread-multi-2level /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/site_perl/5.26.2 /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/5.26.2/darwin-thread-multi-2level /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/5.26.2).
BEGIN failed--compilation aborted.
Warning in system(paste(perl, "-MXML::Simple -e 1"), intern = TRUE) :
  running command '/Users/biocbuild/perl5/perlbrew/perls/5.26.2/bin/perl -MXML::Simple -e 1' had status 2
Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") :
  XML::Simple module for perl is not installed. 
            If you don't want to install a local clustal omega and use the web service, XML::Simple is required

Can't locate LWP.pm in @INC (you may need to install the LWP module) (@INC contains: ##PATH_TO##/bioperl-1.6.924 /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/site_perl/5.26.2/darwin-thread-multi-2level /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/site_perl/5.26.2 /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/5.26.2/darwin-thread-multi-2level /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/5.26.2).
BEGIN failed--compilation aborted.
Warning in system(paste(perl, "-MLWP -e 1"), intern = TRUE) :
  running command '/Users/biocbuild/perl5/perlbrew/perls/5.26.2/bin/perl -MLWP -e 1' had status 2
Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") :
  LWP module for perl is not installed. 
            If you don't want to install a local clustal omega and use the web service, LWP is required

Warning: Package 'LowMACA' is deprecated and will be removed from Bioconductor
  version 3.19
** testing if installed package can be loaded from final location
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
Can't locate XML/Simple.pm in @INC (you may need to install the XML::Simple module) (@INC contains: ##PATH_TO##/bioperl-1.6.924 /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/site_perl/5.26.2/darwin-thread-multi-2level /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/site_perl/5.26.2 /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/5.26.2/darwin-thread-multi-2level /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/5.26.2).
BEGIN failed--compilation aborted.
Warning in system(paste(perl, "-MXML::Simple -e 1"), intern = TRUE) :
  running command '/Users/biocbuild/perl5/perlbrew/perls/5.26.2/bin/perl -MXML::Simple -e 1' had status 2
Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") :
  XML::Simple module for perl is not installed. 
            If you don't want to install a local clustal omega and use the web service, XML::Simple is required

Can't locate LWP.pm in @INC (you may need to install the LWP module) (@INC contains: ##PATH_TO##/bioperl-1.6.924 /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/site_perl/5.26.2/darwin-thread-multi-2level /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/site_perl/5.26.2 /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/5.26.2/darwin-thread-multi-2level /Users/biocbuild/perl5/perlbrew/perls/5.26.2/lib/5.26.2).
BEGIN failed--compilation aborted.
Warning in system(paste(perl, "-MLWP -e 1"), intern = TRUE) :
  running command '/Users/biocbuild/perl5/perlbrew/perls/5.26.2/bin/perl -MLWP -e 1' had status 2
Warning in .PerlModuleChecks(stop = FALSE, perl = "perl") :
  LWP module for perl is not installed. 
            If you don't want to install a local clustal omega and use the web service, LWP is required

Warning: Package 'LowMACA' is deprecated and will be removed from Bioconductor
  version 3.19
** testing if installed package keeps a record of temporary installation path
* DONE (LowMACA)