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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:EWCE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings EWCE_1.10.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/EWCE.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EWCE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EWCE’ version ‘1.10.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EWCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                             user system elapsed
controlled_geneset_enrichment              38.226  1.701  41.765
merged_ewce                                30.027  1.098  34.115
generate_bootstrap_plots_for_transcriptome 26.669  0.995  30.304
filter_genes_without_1to1_homolog          25.136  0.707  31.329
filter_nonorthologs                        23.317  0.750  31.849
generate_bootstrap_plots                   22.729  0.892  27.158
bootstrap_enrichment_test                  18.737  0.607  20.845
ewce_expression_data                       17.904  0.613  20.298
check_ewce_genelist_inputs                 16.343  0.507  18.054
sct_normalize                              16.045  0.398  18.127
add_res_to_merging_list                    13.097  1.623  16.731
filter_ctd_genes                           12.774  0.300  14.170
merge_ctd                                  12.475  0.565  19.985
standardise_ctd                            12.667  0.297  13.717
merge_sce                                   9.791  0.322  11.135
fix_bad_mgi_symbols                         9.030  0.613  14.939
bin_columns_into_quantiles                  8.722  0.239   9.790
bin_specificity_into_quantiles              8.394  0.268   9.329
plot_ctd                                    8.114  0.192   8.879
ctd_to_sce                                  8.093  0.177   8.527
drop_uninformative_genes                    6.914  0.643   7.936
generate_celltype_data                      6.554  0.311   7.692
get_celltype_table                          5.235  0.237   6.008
merge_two_expfiles                          4.978  0.271   5.956
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK