############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DelayedTensor_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/DelayedTensor.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DelayedTensor/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DelayedTensor’ version ‘1.8.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DelayedTensor’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .block_khatri_rao_IDX2: no visible global function definition for ‘Lindex2Mindex’ .block_khatri_rao_IDX2: no visible global function definition for ‘Mindex2Lindex’ .block_kroneckerIDX: no visible global function definition for ‘Lindex2Mindex’ .block_kroneckerIDX: no visible global function definition for ‘Mindex2Lindex’ .block_reshape: no visible global function definition for ‘Lindex2Mindex’ .block_vec: no visible global function definition for ‘Mindex2Lindex’ .read_block_einsum: no visible global function definition for ‘Mindex2Lindex’ .tickMarksScheduling2: no visible global function definition for ‘Mindex2Lindex’ .write_block_einsum: no visible global function definition for ‘Mindex2Lindex’ einsum: no visible global function definition for ‘Lindex2Mindex’ Undefined global functions or variables: Lindex2Mindex Mindex2Lindex * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress human_mid_brain.rda 677Kb 441Kb xz mouse_mid_brain.rda 761Kb 511Kb xz * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed cp 225.254 21.733 284.301 tucker 35.386 3.374 41.298 mpca 15.974 1.551 18.450 pvd 9.563 0.860 10.981 hosvd 5.606 0.541 6.733 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/Users/biocbuild/bbs-3.18-bioc/meat/DelayedTensor.Rcheck/00check.log’ for details.