############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings DelayedTensor_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/DelayedTensor.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (GCC) 10.3.1 GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DelayedTensor/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DelayedTensor’ version ‘1.8.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DelayedTensor’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .block_khatri_rao_IDX2: no visible global function definition for ‘Lindex2Mindex’ .block_khatri_rao_IDX2: no visible global function definition for ‘Mindex2Lindex’ .block_kroneckerIDX: no visible global function definition for ‘Lindex2Mindex’ .block_kroneckerIDX: no visible global function definition for ‘Mindex2Lindex’ .block_reshape: no visible global function definition for ‘Lindex2Mindex’ .block_vec: no visible global function definition for ‘Mindex2Lindex’ .read_block_einsum: no visible global function definition for ‘Mindex2Lindex’ .tickMarksScheduling2: no visible global function definition for ‘Mindex2Lindex’ .write_block_einsum: no visible global function definition for ‘Mindex2Lindex’ einsum: no visible global function definition for ‘Lindex2Mindex’ Undefined global functions or variables: Lindex2Mindex Mindex2Lindex * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress human_mid_brain.rda 677Kb 442Kb xz mouse_mid_brain.rda 761Kb 511Kb xz * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed cp 153.115 14.186 190.360 tucker 23.992 0.740 24.832 mpca 11.195 0.346 11.585 pvd 6.676 0.187 6.891 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.18-bioc/meat/DelayedTensor.Rcheck/00check.log’ for details.