############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data CuratedAtlasQueryR ### ############################################################################## ############################################################################## * checking for file ‘CuratedAtlasQueryR/DESCRIPTION’ ... OK * preparing ‘CuratedAtlasQueryR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Introduction.Rmd’ using rmarkdown Quitting from lines 102-105 [unnamed-chunk-6] (Introduction.Rmd) Error: processing vignette 'Introduction.Rmd' failed with diagnostics: Failed to collect lazy table. Caused by error: ! rapi_prepare: Failed to prepare query SELECT "/home/biocbuild/.cache/R/CuratedAtlasQueryR/metadata.0.2.3.parquet".* FROM "/home/biocbuild/.cache/R/CuratedAtlasQueryR/metadata.0.2.3.parquet" LIMIT 11 Error: Binder Error: Referenced table "/home/biocbuild/.cache/R/CuratedAtlasQueryR/metadata.0.2.3.parquet" not found! Candidate tables: "metadata" --- failed re-building ‘Introduction.Rmd’ SUMMARY: processing the following file failed: ‘Introduction.Rmd’ Error: Vignette re-building failed. Execution halted Warning messages: 1: Connection is garbage-collected, use dbDisconnect() to avoid this. 2: Database is garbage-collected, use dbDisconnect(con, shutdown=TRUE) or duckdb::duckdb_shutdown(drv) to avoid this.