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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CATALYST.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CATALYST_1.26.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc/meat/CATALYST.Rcheck’
* using R version 4.3.2 Patched (2023-11-01 r85457)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CATALYST/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CATALYST’ version ‘1.26.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CATALYST’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.cluster_cols’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
plotMultiHeatmap 15.281  1.290  16.925
plotPbExprs      14.288  1.154  15.651
plotDiffHeatmap  13.892  1.290  15.369
plotDR           12.850  1.324  14.355
sce2fcs          11.230  1.518  12.942
plotExprHeatmap  11.125  1.042  12.325
SCE-accessors     7.649  1.023   8.770
plotFreqHeatmap   7.037  1.397   8.561
plotClusterExprs  7.139  0.983   8.235
plotAbundances    6.880  1.132   8.153
clrDR             6.919  1.006   8.032
filterSCE         6.629  1.272   7.995
plotCodes         6.909  0.907   7.904
pbMDS             6.661  0.928   7.712
mergeClusters     6.475  0.983   7.586
compCytof         6.951  0.365   7.393
plotYields        6.339  0.364   6.770
extractClusters   5.497  1.026   6.598
plotMahal         6.304  0.128   6.503
cluster           5.048  0.890   6.035
plotSpillmat      5.091  0.186   5.346
runDR             5.097  0.118   5.264
plotScatter       4.908  0.211   5.245
adaptSpillmat     4.856  0.211   5.113
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  The following objects are masked from 'package:matrixStats':
  
      anyMissing, rowMedians
  
  > 
  > test_check("CATALYST")
  [ FAIL 1 | WARN 3 | SKIP 0 | PASS 740 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_plotScatter.R:39:5'): plotScatter() - color_by ───────────────
  p$guides$colour inherits from `'NULL'` not `'character'`.
  
  [ FAIL 1 | WARN 3 | SKIP 0 | PASS 740 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.18-bioc/meat/CATALYST.Rcheck/00check.log’
for details.