############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationHub ### ############################################################################## ############################################################################## * checking for file ‘AnnotationHub/DESCRIPTION’ ... OK * preparing ‘AnnotationHub’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘AnnotationHub-HOWTO.Rmd’ using rmarkdown Quitting from lines 41-45 [less-model-org] (AnnotationHub-HOWTO.Rmd) Error: processing vignette 'AnnotationHub-HOWTO.Rmd' failed with diagnostics: failed to load resource name: AH111590 title: org.Triticum_aestivum.eg.sqlite reason: database disk image is malformed --- failed re-building ‘AnnotationHub-HOWTO.Rmd’ --- re-building ‘AnnotationHub.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection --- finished re-building ‘AnnotationHub.Rmd’ --- re-building ‘TroubleshootingTheCache.Rmd’ using rmarkdown --- finished re-building ‘TroubleshootingTheCache.Rmd’ SUMMARY: processing the following file failed: ‘AnnotationHub-HOWTO.Rmd’ Error: Vignette re-building failed. Execution halted