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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:EWCE.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings EWCE_1.7.4.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/EWCE.Rcheck’
* using R version 4.3.0 alpha (2023-04-03 r84154)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘EWCE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EWCE’ version ‘1.7.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EWCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                             user system elapsed
merged_ewce                                27.047  1.620  32.167
generate_bootstrap_plots                   21.728  1.320  23.040
controlled_geneset_enrichment              21.677  1.015  23.043
generate_bootstrap_plots_for_transcriptome 17.486  1.017  18.546
filter_nonorthologs                        16.247  0.704  16.890
filter_genes_without_1to1_homolog          15.516  0.628  16.154
ewce_expression_data                       11.828  0.844  12.695
check_ewce_genelist_inputs                 10.772  0.784  11.567
sct_normalize                              10.571  0.896  12.173
bootstrap_enrichment_test                  10.721  0.716  11.463
generate_celltype_data                      8.924  1.232  14.777
merge_ctd                                   8.842  0.832  10.012
standardise_ctd                             8.214  0.404   8.559
filter_ctd_genes                            7.746  0.344   8.092
add_res_to_merging_list                     6.798  0.713   8.123
fix_bad_mgi_symbols                         5.887  0.808   6.980
drop_uninformative_genes                    4.754  0.762   5.628
plot_ctd                                    5.177  0.164   5.493
get_celltype_table                          4.352  0.804   5.443
merge_sce                                   4.806  0.288   5.267
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘EWCE.Rmd’ using ‘UTF-8’... OK
  ‘extended.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK