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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:DAPARdata.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings DAPARdata_1.30.4.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/DAPARdata.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘DAPARdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAPARdata’ version ‘1.30.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAPARdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 42.2Mb
  sub-directories of 1Mb or more:
    data     12.2Mb
    extdata  29.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS’:
  Cannot process chunk/lines:
    Reformat the documentation of the package
  Cannot process chunk/lines:
    Obsolete vignettes deleted
  Cannot process chunk/lines:
    Reformat the documentation of the package
  Cannot process chunk/lines:
    Reformat the documentation of the package
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘BiocStyle’ ‘graph’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                       old_size new_size compress
  Exp1_R25_pept.RData     2.9Mb    1.6Mb       xz
  Exp1_R25_prot.RData     1.2Mb    644Kb       xz
  Exp1_R2_pept.RData      2.4Mb    1.3Mb       xz
  Exp1_R2_prot.RData      1.2Mb    638Kb       xz
  Exp2_R100_pept.RData    1.2Mb    729Kb       xz
  Exp2_R100_prot.RData    586Kb    282Kb       xz
  Exp2_R10_pept.RData     1.2Mb    716Kb       xz
  Exp2_R10_prot.RData     593Kb    285Kb       xz
  Exp2_R2_pept.RData      1.2Mb    685Kb       xz
  Exp2_R2_prot.RData      591Kb    279Kb       xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
BuildAllDatasets 33.878  3.724  37.623
Exp1_R25_pept     9.858  1.300  11.158
Exp1_R2_pept      9.608  1.472  11.079
Set_X_CC_infos    7.882  1.396   9.278
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘dapardata.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-data-experiment/meat/DAPARdata.Rcheck/00check.log’
for details.