############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL vsclust ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'vsclust' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c vsclust_algo.cpp -o vsclust_algo.o vsclust_algo.cpp: In function 'void object_memberships(const Rcpp::NumericMatrix&, int, const Rcpp::NumericVector&, int, Rcpp::NumericMatrix&)': vsclust_algo.cpp:115:12: warning: unused variable 'epsilon' [-Wunused-variable] 115 | double epsilon = 0.00001; | ^~~~~~~ vsclust_algo.cpp: In function 'double c_plusplus_means(const Rcpp::NumericMatrix&, Rcpp::NumericMatrix&, Rcpp::NumericVector&, Rcpp::NumericVector&, int, int, double, int, Rcpp::NumericMatrix&, double, Rcpp::IntegerVector&, double, double)': vsclust_algo.cpp:371:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 371 | if(verbose) | ^~ vsclust_algo.cpp:374:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 374 | ermin = new_fitness; | ^~~~~ g++ -std=gnu++11 -shared -s -static-libgcc -o vsclust.dll tmp.def RcppExports.o vsclust_algo.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-vsclust/00new/vsclust/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vsclust)