############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf trackViewer.buildbin-libdir && mkdir trackViewer.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=trackViewer.buildbin-libdir trackViewer_1.35.2.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'trackViewer' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hic.cpp -o hic.o hic.cpp: In member function 'void HicFileHead::readHeader(std::ifstream&)': hic.cpp:247:16: warning: unused variable 'nviPosition' [-Wunused-variable] 247 | long nviPosition = readLong(ifile); | ^~~~~~~~~~~ hic.cpp:248:16: warning: unused variable 'nviLength' [-Wunused-variable] 248 | long nviLength = readLong(ifile); | ^~~~~~~~~ In member function 'int body::getResolution(int)', inlined from 'std::vector getByCoor(std::string, int, int, std::string, int, int, int, std::string, std::string, HicFileHead&, HicFileFoot&, std::ifstream&)' at hic.cpp:799:33: hic.cpp:751:19: warning: 'bd.body::data.resolutions::nResolutions' may be used uninitialized [-Wmaybe-uninitialized] 751 | for(int i=0; i getByCoor(std::string, int, int, std::string, int, int, int, std::string, std::string, HicFileHead&, HicFileFoot&, std::ifstream&)': hic.cpp:797:10: note: 'bd.body::data.resolutions::nResolutions' was declared here 797 | body bd; | ^~ hic.cpp:803:39: warning: 'bd.body::data.resolutions::res' may be used uninitialized [-Wmaybe-uninitialized] 803 | resolution res = bd.data.res[resId]; | ^ hic.cpp:797:10: note: 'bd.body::data.resolutions::res' was declared here 797 | body bd; | ^~ g++ -std=gnu++11 -shared -s -static-libgcc -o trackViewer.dll tmp.def RcppExports.o hic.o -lz -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/trackViewer.buildbin-libdir/00LOCK-trackViewer/00new/trackViewer/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'trackViewer' as trackViewer_1.35.2.zip * DONE (trackViewer)