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###
### Running command:
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###   rm -rf scPipe.buildbin-libdir && mkdir scPipe.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=scPipe.buildbin-libdir scPipe_1.21.1.tar.gz
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* installing *source* package 'scPipe' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Gene.cpp -o Gene.o
Gene.cpp: In member function 'void Gene::flatten_exon()':
Gene.cpp:105:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Interval>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  105 |     for (auto i = 1; i < exon_vec.size(); i++)
      |                      ~~^~~~~~~~~~~~~~~~~
Gene.cpp: In function 'std::ostream& operator<<(std::ostream&, const Gene&)':
Gene.cpp:130:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Interval>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  130 |     for (int i = 0; i < obj.exon_vec.size(); ++i)
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Interval.cpp -o Interval.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cellbarcode.cpp -o cellbarcode.o
cellbarcode.cpp: In member function 'std::string Barcode::get_closest_match(const std::string&, int)':
cellbarcode.cpp:77:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   77 |     for (int i = 0; i < barcode_list.size(); i++)
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
cellbarcode.cpp:82:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   82 |     for (int i = 0; i < hamming_dists.size(); i++)
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c detect_barcode.cpp -o detect_barcode.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c parsebam.cpp -o parsebam.o
parsebam.cpp: In member function 'int Bamdemultiplex::clean_bam_barcode(std::string, std::string, int, int)':
parsebam.cpp:78:9: warning: variable 'hts_retcode' set but not used [-Wunused-but-set-variable]
   78 |     int hts_retcode;
      |         ^~~~~~~~~~~
parsebam.cpp:116:9: warning: unused variable 'map_status' [-Wunused-variable]
  116 |     int map_status;
      |         ^~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c parsecount.cpp -o parsecount.o
parsecount.cpp: In function 'void write_stat(std::string, std::string, std::vector<int>, std::unordered_map<std::__cxx11::basic_string<char>, UMI_dedup_stat>)':
parsecount.cpp:266:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  266 |     for (int i=0; i<UMI_dup_count.size(); i++)
      |                   ~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rcpp_scPipe_func.cpp -o rcpp_scPipe_func.o
In file included from rcpp_scPipe_func.cpp:7:
transcriptmapping.h: In member function 'void GeneBin::add_gene(Gene)':
transcriptmapping.h:42:21: warning: comparison of integer expressions of different signedness: 'int' and 'GeneBin::ull_int' {aka 'long long unsigned int'} [-Wsign-compare]
   42 |         if (gene.st < start)
      |             ~~~~~~~~^~~~~~~
transcriptmapping.h:46:21: warning: comparison of integer expressions of different signedness: 'int' and 'GeneBin::ull_int' {aka 'long long unsigned int'} [-Wsign-compare]
   46 |         if (gene.en > end)
      |             ~~~~~~~~^~~~~
transcriptmapping.h: In member function 'const bool GeneBin::overlaps(const Interval&)':
transcriptmapping.h:54:24: warning: comparison of integer expressions of different signedness: 'GeneBin::ull_int' {aka 'long long unsigned int'} and 'const int' [-Wsign-compare]
   54 |         return !(start > it.en) && !(end < it.st);
      |                  ~~~~~~^~~~~~~
transcriptmapping.h:54:42: warning: comparison of integer expressions of different signedness: 'GeneBin::ull_int' {aka 'long long unsigned int'} and 'const int' [-Wsign-compare]
   54 |         return !(start > it.en) && !(end < it.st);
      |                                      ~~~~^~~~~~~
In file included from config_hts.h:8,
                 from trimbarcode.h:6,
                 from rcpp_scPipe_func.cpp:3:
trimbarcode.h: At global scope:
F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:185:19: warning: 'int kseq_read(kseq_t*)' defined but not used [-Wunused-function]
  185 |         SCOPE int kseq_read(kseq_t *seq) \
      |                   ^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:185:19: note: in definition of macro '__KSEQ_READ'
  185 |         SCOPE int kseq_read(kseq_t *seq) \
      |                   ^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:240:35: note: in expansion of macro 'KSEQ_INIT2'
  240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
trimbarcode.h:11:1: note: in expansion of macro 'KSEQ_INIT'
   11 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:171:20: warning: 'void kseq_destroy(kseq_t*)' defined but not used [-Wunused-function]
  171 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
      |                    ^~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:171:20: note: in definition of macro '__KSEQ_BASIC'
  171 |         SCOPE void kseq_destroy(kseq_t *ks)                                                                     \
      |                    ^~~~~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:240:35: note: in expansion of macro 'KSEQ_INIT2'
  240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
trimbarcode.h:11:1: note: in expansion of macro 'KSEQ_INIT'
   11 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:165:23: warning: 'kseq_t* kseq_init(bioc_gzFile)' defined but not used [-Wunused-function]
  165 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
      |                       ^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:165:23: note: in definition of macro '__KSEQ_BASIC'
  165 |         SCOPE kseq_t *kseq_init(type_t fd)                                                                      \
      |                       ^~~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:240:35: note: in expansion of macro 'KSEQ_INIT2'
  240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
      |                                   ^~~~~~~~~~
trimbarcode.h:11:1: note: in expansion of macro 'KSEQ_INIT'
   11 | KSEQ_INIT(gzFile, gzread)
      | ^~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-cpp.cpp -o test-cpp.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c transcriptmapping.cpp -o transcriptmapping.o
In file included from transcriptmapping.cpp:2:
transcriptmapping.h: In member function 'void GeneBin::add_gene(Gene)':
transcriptmapping.h:42:21: warning: comparison of integer expressions of different signedness: 'int' and 'GeneBin::ull_int' {aka 'long long unsigned int'} [-Wsign-compare]
   42 |         if (gene.st < start)
      |             ~~~~~~~~^~~~~~~
transcriptmapping.h:46:21: warning: comparison of integer expressions of different signedness: 'int' and 'GeneBin::ull_int' {aka 'long long unsigned int'} [-Wsign-compare]
   46 |         if (gene.en > end)
      |             ~~~~~~~~^~~~~
transcriptmapping.h: In member function 'const bool GeneBin::overlaps(const Interval&)':
transcriptmapping.h:54:24: warning: comparison of integer expressions of different signedness: 'GeneBin::ull_int' {aka 'long long unsigned int'} and 'const int' [-Wsign-compare]
   54 |         return !(start > it.en) && !(end < it.st);
      |                  ~~~~~~^~~~~~~
transcriptmapping.h:54:42: warning: comparison of integer expressions of different signedness: 'GeneBin::ull_int' {aka 'long long unsigned int'} and 'const int' [-Wsign-compare]
   54 |         return !(start > it.en) && !(end < it.st);
      |                                      ~~~~^~~~~~~
transcriptmapping.cpp: In member function 'int Mapping::map_exon(bam_hdr_t*, bam1_t*, std::string&, bool)':
transcriptmapping.cpp:533:20: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
  533 |     for (int c=0; c<b->core.n_cigar; c++)
      |                   ~^~~~~~~~~~~~~~~~
transcriptmapping.cpp: In member function 'void Mapping::parse_align_warpper(std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::string, bool, std::string, std::string, std::string, std::string, int, int, int)':
transcriptmapping.cpp:678:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  678 |       for (int i=1;i<fn_vec.size();i++)
      |                    ~^~~~~~~~~~~~~~
transcriptmapping.cpp:686:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  686 |       for (int i=1;i<fn_vec.size();i++)
      |                    ~^~~~~~~~~~~~~~
transcriptmapping.cpp: In function 'std::pair<int, int> {anonymous}::get_bc_umi_lengths(std::string)':
transcriptmapping.cpp:701:20: warning: unused variable 'bam_hdr' [-Wunused-variable]
  701 |         bam_hdr_t *bam_hdr = bam_hdr_read(fp);
      |                    ^~~~~~~
transcriptmapping.cpp: In member function 'void Mapping::parse_align(std::string, std::string, bool, std::string, std::string, std::string, std::string, int, std::string, std::string, int, int)':
transcriptmapping.cpp:755:9: warning: variable 'hts_retcode' set but not used [-Wunused-but-set-variable]
  755 |     int hts_retcode;
      |         ^~~~~~~~~~~
transcriptmapping.cpp: At global scope:
transcriptmapping.cpp:699:25: warning: 'std::pair<int, int> {anonymous}::get_bc_umi_lengths(std::string)' defined but not used [-Wunused-function]
  699 |     std::pair<int, int> get_bc_umi_lengths(string bam_fn) {
      |                         ^~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c trimbarcode.cpp -o trimbarcode.o
trimbarcode.cpp: In function 'void kseq_t_to_bam_t(kseq_t*, bam1_t*, int)':
trimbarcode.cpp:38:19: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
   38 |     if (b->m_data < b->l_data)
      |         ~~~~~~~~~~^~~~~~~~~~~
trimbarcode.cpp: In function 'void paired_fastq_to_bam(char*, char*, char*, read_s, filter_s)':
trimbarcode.cpp:92:9: warning: variable 'hts_retcode' set but not used [-Wunused-but-set-variable]
   92 |     int hts_retcode;
      |         ^~~~~~~~~~~
trimbarcode.cpp:207:15: warning: pointer 'old_name_adr' used after 'void* realloc(void*, size_t)' [-Wuse-after-free]
  207 |         memcpy(new_name_adr, old_name_adr, n_char_copied);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
trimbarcode.cpp:206:38: note: call to 'void* realloc(void*, size_t)' here
  206 |         seq1->name.s = (char*)realloc(old_name_adr, new_name_length);
      |                               ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
trimbarcode.cpp: In function 'void paired_fastq_to_fastq(char*, char*, char*, read_s, filter_s, bool)':
trimbarcode.cpp:450:24: warning: 'o_stream_gz' may be used uninitialized [-Wmaybe-uninitialized]
  450 |             fq_gz_write(o_stream_gz, seq1, bc1_end); // write to gzipped fastq file
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
trimbarcode.cpp:302:12: note: 'o_stream_gz' was declared here
  302 |     gzFile o_stream_gz;
      |            ^~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
g++ -shared -s -static-libgcc -o scPipe.dll tmp.def Gene.o Interval.o RcppExports.o cellbarcode.o detect_barcode.o parsebam.o parsecount.o rcpp_scPipe_func.o test-cpp.o test-runner.o transcriptmapping.o trimbarcode.o utils.o F:/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -lz -lm -lbz2 -llzma -lcurl -lidn2 -lunistring -liconv -lssl -lcrypto -lcrypt32 -lwsock32 -lwldap32 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lzstd -lregex -LF:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/scPipe.buildbin-libdir/00LOCK-scPipe/00new/scPipe/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'scPipe' as scPipe_1.21.1.zip
* DONE (scPipe)