############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf distinct.buildbin-libdir && mkdir distinct.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=distinct.buildbin-libdir distinct_1.11.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'distinct' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' using C++11 g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm.cpp -o Perm.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm_covariates.cpp -o Perm_covariates.o In file included from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast.h:5, from Perm_covariates.cpp:2: F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 553 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:604: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 604 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:621: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 621 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:639: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 639 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:654: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 654 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:669: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 669 | #pragma omp parallel for | Perm_covariates.cpp: In function 'arma::vec my_rint_reg(const arma::mat&, const arma::vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)': Perm_covariates.cpp:189:16: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] 189 | for(int i=0;i tol) { | ~~~^~~~~~~~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm_covariates_parallel.cpp -o Perm_covariates_parallel.o In file included from F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast.h:5, from Perm_covariates_parallel.cpp:2: F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 553 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:604: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 604 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:621: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 621 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:639: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 639 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:654: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 654 | #pragma omp parallel for | F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include/Rfast/matrix.hpp:669: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 669 | #pragma omp parallel for | Perm_covariates_parallel.cpp: In function 'arma::vec my_rint_reg_parallel(const arma::mat&, const arma::vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)': Perm_covariates_parallel.cpp:189:16: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] 189 | for(int i=0;i tol) { | ~~~^~~~~~~~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Perm_parallel.cpp -o Perm_parallel.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rfast/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -shared -s -static-libgcc -o distinct.dll tmp.def Perm.o Perm_covariates.o Perm_covariates_parallel.o Perm_parallel.o RcppExports.o -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/distinct.buildbin-libdir/00LOCK-distinct/00new/distinct/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'distinct' as distinct_1.11.0.zip * DONE (distinct)