Back to Build/check report for BioC 3.17
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-01-02 09:00:20 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbChebi on palomino5


To the developers/maintainers of the biodbChebi package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 178/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbChebi 1.5.0  (landing page)
Pierrick Roger
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: master
git_last_commit: b300c94
git_last_commit_date: 2022-11-01 11:25:43 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: biodbChebi
Version: 1.5.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings biodbChebi_1.5.0.tar.gz
StartedAt: 2022-12-28 21:58:46 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 22:00:09 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 83.1 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings biodbChebi_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/biodbChebi.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'biodbChebi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-12-28 21:59:39.141][biodb::testContext]
biodb.INFO [2022-12-28 21:59:39.144][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 21:59:39.145][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-12-28 21:59:39.147][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 21:59:39.148][biodb::testContext]
biodb.INFO [2022-12-28 21:59:39.166][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2022-12-28 21:59:39.168][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-12-28 21:59:39.177][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:39.179][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-12-28 21:59:39.180][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-12-28 21:59:39.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.185][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-12-28 21:59:39.204][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-12-28 21:59:39.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.209][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-12-28 21:59:39.210][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-12-28 21:59:39.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.215][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-12-28 21:59:39.216][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-12-28 21:59:39.218][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-12-28 21:59:39.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.222][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-12-28 21:59:39.224][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-12-28 21:59:39.225][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-12-28 21:59:39.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.230][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-12-28 21:59:39.231][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-12-28 21:59:39.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.236][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-12-28 21:59:39.237][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-12-28 21:59:39.238][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-12-28 21:59:39.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.243][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-12-28 21:59:39.244][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-12-28 21:59:39.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.249][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-12-28 21:59:39.259][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-12-28 21:59:39.260][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-12-28 21:59:39.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.264][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-12-28 21:59:39.265][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-12-28 21:59:39.266][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-12-28 21:59:39.267][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-12-28 21:59:39.268][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-12-28 21:59:39.270][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-12-28 21:59:39.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.273][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-12-28 21:59:39.274][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-12-28 21:59:39.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.278][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-12-28 21:59:39.280][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-12-28 21:59:39.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.284][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-12-28 21:59:39.285][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-12-28 21:59:39.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.289][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-12-28 21:59:39.290][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-12-28 21:59:39.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.294][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-12-28 21:59:39.295][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-12-28 21:59:39.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.299][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-12-28 21:59:39.300][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-12-28 21:59:39.303][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-12-28 21:59:39.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.307][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-12-28 21:59:39.308][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-12-28 21:59:39.310][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-12-28 21:59:39.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.316][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-12-28 21:59:39.341][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.353][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-12-28 21:59:39.354][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.356][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:39.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.358][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.359][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.360][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.361][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 21:59:39.362][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:39.363][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.364][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-12-28 21:59:39.366][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:39.367][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.368][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.369][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:39.369][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:39.369][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:39.369][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 21:59:39.369][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 21:59:39.370][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:39.371][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:39.372][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:39.373][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:39.374][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:39.375][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:39.376][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.377][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.378][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:39.379][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:39.380][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.381][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.383][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-12-28 21:59:39.385][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.386][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 21:59:39.387][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:39.389][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.390][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.391][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.392][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.393][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 21:59:39.394][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:39.396][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.397][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-12-28 21:59:39.398][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:39.399][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.400][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.401][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:39.401][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:39.401][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:39.401][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 21:59:39.401][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 21:59:39.402][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:39.403][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:39.404][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:39.405][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:39.406][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:39.407][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:39.408][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.409][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.410][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:39.411][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:39.412][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.413][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.415][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-12-28 21:59:39.417][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.418][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-12-28 21:59:39.419][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.420][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:39.421][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.422][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.423][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.424][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.425][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 21:59:39.426][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:39.427][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.428][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-12-28 21:59:39.429][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:39.431][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.432][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.433][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.434][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:39.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:39.436][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:39.437][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:39.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:39.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:39.441][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.442][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.443][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:39.444][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:39.445][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.446][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.447][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-12-28 21:59:39.449][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.450][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 21:59:39.451][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.452][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:39.453][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.454][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.456][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.457][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.458][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 21:59:39.459][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:39.460][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.461][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-12-28 21:59:39.467][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:39.468][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.469][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:39.470][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.471][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:39.472][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:39.473][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:39.474][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:39.475][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:39.476][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:39.477][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:39.478][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.479][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:39.480][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:39.481][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:39.482][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:39.486][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:39.487][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.571][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-12-28 21:59:39.575][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-12-28 21:59:39.576][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-12-28 21:59:39.578][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-12-28 21:59:39.580][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 21:59:39.582][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 21:59:39.584][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-12-28 21:59:39.587][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-12-28 21:59:39.589][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-12-28 21:59:39.591][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 21:59:39.593][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 21:59:39.596][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-12-28 21:59:39.598][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-12-28 21:59:39.601][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-12-28 21:59:39.603][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-12-28 21:59:39.605][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 21:59:39.607][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-12-28 21:59:39.610][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-12-28 21:59:39.612][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 21:59:39.614][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-12-28 21:59:39.617][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-12-28 21:59:39.619][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-12-28 21:59:39.621][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-12-28 21:59:39.624][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-12-28 21:59:39.626][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-12-28 21:59:39.628][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-12-28 21:59:39.631][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-12-28 21:59:39.633][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-12-28 21:59:39.635][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-12-28 21:59:39.637][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-12-28 21:59:39.640][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-12-28 21:59:39.642][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-12-28 21:59:39.644][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-12-28 21:59:39.647][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-12-28 21:59:39.649][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-12-28 21:59:39.651][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-12-28 21:59:39.653][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-12-28 21:59:39.656][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-12-28 21:59:39.658][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-12-28 21:59:39.660][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-12-28 21:59:39.663][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-12-28 21:59:39.665][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-12-28 21:59:39.667][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-12-28 21:59:39.670][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-12-28 21:59:39.672][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-12-28 21:59:39.675][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-12-28 21:59:39.677][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-12-28 21:59:39.679][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-12-28 21:59:39.682][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-12-28 21:59:39.684][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-12-28 21:59:39.686][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-12-28 21:59:39.688][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-12-28 21:59:39.690][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-12-28 21:59:39.693][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-12-28 21:59:39.695][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-12-28 21:59:39.697][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-12-28 21:59:39.699][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-12-28 21:59:39.702][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-12-28 21:59:39.704][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-12-28 21:59:39.706][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-12-28 21:59:39.708][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-12-28 21:59:39.710][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-12-28 21:59:39.713][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-12-28 21:59:39.715][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-12-28 21:59:39.717][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-12-28 21:59:39.719][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-12-28 21:59:39.721][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 21:59:39.723][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 21:59:39.725][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-12-28 21:59:39.728][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-12-28 21:59:39.730][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-12-28 21:59:39.733][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-12-28 21:59:39.736][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-12-28 21:59:39.744][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-12-28 21:59:39.746][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-12-28 21:59:39.748][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-12-28 21:59:39.750][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-12-28 21:59:39.752][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-12-28 21:59:39.754][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-12-28 21:59:39.756][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-12-28 21:59:39.758][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-12-28 21:59:39.761][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-12-28 21:59:39.763][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-12-28 21:59:39.804][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-12-28 21:59:39.808][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2022-12-28 21:59:39.814][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:39.816][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.820][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:39.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:39.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:39.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:39.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:39.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:39.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:39.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:40.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:40.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:40.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:40.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:40.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:40.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:40.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:40.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:40.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:40.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:40.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:40.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:40.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:40.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:40.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:40.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:40.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:40.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:40.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:40.037][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-12-28 21:59:40.054][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-12-28 21:59:40.058][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:40.060][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-12-28 21:59:40.062][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:40.064][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:40.066][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:40.068][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:40.070][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:40.072][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-12-28 21:59:40.074][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-12-28 21:59:40.076][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:40.078][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:40.080][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-12-28 21:59:40.082][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-12-28 21:59:40.084][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-12-28 21:59:40.087][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:40.089][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:40.089][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:40.089][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:40.091][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-12-28 21:59:40.093][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:40.095][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:40.096][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:40.098][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:40.100][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:40.102][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:40.104][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-12-28 21:59:40.104][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-12-28 21:59:40.106][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:40.108][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:40.110][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:40.112][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-12-28 21:59:40.112][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-12-28 21:59:40.122][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 21:59:40.125][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 21:59:40.128][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-12-28 21:59:40.131][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 21:59:40.134][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 21:59:40.137][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 21:59:40.178][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-12-28 21:59:40.181][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-12-28 21:59:40.188][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-12-28 21:59:40.195][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-12-28 21:59:40.202][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 21:59:40.204][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 21:59:40.207][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-12-28 21:59:40.209][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-12-28 21:59:40.234][biodb::testThat]
biodb.INFO [2022-12-28 21:59:40.236][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-12-28 21:59:40.238][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:40.239][biodb::testThat]
biodb.TRACE[2022-12-28 21:59:40.246][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-12-28 21:59:40.253][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:40.258][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:40.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:40.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:40.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:40.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:40.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:40.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:40.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:40.310][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.312][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.315][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.345][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:40.347][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.350][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.397][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:40.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:40.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.403][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:40.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:40.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.421][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.434][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:40.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:40.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.439][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:40.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:40.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:40.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.458][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.460][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:40.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:40.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.471][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:40.473][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.476][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:40.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:40.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.527][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:40.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:40.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.533][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:40.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:40.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.546][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:40.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:40.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.552][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:40.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.567][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:40.569][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:40.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.572][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.589][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:40.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:40.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.595][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:40.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:40.698][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-12-28 21:59:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:40.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:40.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:40.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:40.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:40.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:40.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:40.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 21:59:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 21:59:40.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.787][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 21:59:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 21:59:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-12-28 21:59:40.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-12-28 21:59:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-12-28 21:59:40.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-12-28 21:59:40.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.952][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.956][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:40.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:40.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:40.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:40.999][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:41.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:41.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:41.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:41.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:41.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:41.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.029][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:41.031][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:41.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.033][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:41.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.058][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:41.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:41.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.061][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:41.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:41.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.091][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.096][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.142][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:41.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:41.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.182][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:41.184][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:41.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.187][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.201][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.216][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.218][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.220][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.233][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.238][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.251][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.252][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.255][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.256][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:41.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.291][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:41.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:41.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.297][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.343][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:41.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:41.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.385][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:41.387][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:41.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.390][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.403][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:41.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:41.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.406][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.412][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:41.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:41.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.416][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.422][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:41.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.426][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:41.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:41.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.441][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.453][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.456][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.467][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.469][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:41.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.472][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.480][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:41.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.484][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.490][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:41.492][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.493][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.503][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.504][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:41.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.506][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.513][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:41.514][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:41.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.516][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:41.524][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:41.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.526][ef$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:41.533][biodb::testThat]
biodb.INFO [2022-12-28 21:59:41.534][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-12-28 21:59:41.535][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:41.536][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:41.548][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2022-12-28 21:59:41.554][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:41.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2022-12-28 21:59:41.561][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:41.563][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2022-12-28 21:59:41.564][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:41.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:41.600][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:41.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:41.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:41.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:41.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:41.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:41.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:41.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:41.928][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:41.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:41.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.932][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:41.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:41.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.954][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:41.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:41.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.958][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:41.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:41.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.967][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:41.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:41.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.975][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:41.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:41.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:41.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.987][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:41.996][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.997][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:41.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.000][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.009][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:42.010][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:42.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.012][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.021][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:42.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.024][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:42.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:42.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.036][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:42.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.045][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:42.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:42.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.049][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.058][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:42.059][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:42.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.061][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:42.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:42.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:42.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:42.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.075][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:42.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:42.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:42.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:42.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:42.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:42.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:42.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:42.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:42.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:42.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:42.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:42.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:42.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:42.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:42.132][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2022-12-28 21:59:42.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-12-28 21:59:42.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-12-28 21:59:42.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-12-28 21:59:42.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-12-28 21:59:42.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-12-28 21:59:42.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-12-28 21:59:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:42.154][biodb::testThat]
biodb.INFO [2022-12-28 21:59:42.156][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-12-28 21:59:42.157][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:42.158][biodb::testThat]
biodb.TRACE[2022-12-28 21:59:42.160][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:42.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:42.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.167][ef$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:42.169][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-12-28 21:59:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:42.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:42.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:42.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:42.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:42.214][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-12-28 21:59:42.229][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-12-28 21:59:42.245][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:42.257][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-12-28 21:59:42.259][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:42.261][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-12-28 21:59:42.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:42.284][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:42.286][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-12-28 21:59:42.289][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:42.297][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-12-28 21:59:42.300][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-12-28 21:59:42.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:42.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:42.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.319][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.324][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.328][ef$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:42.330][biodb::testThat]
biodb.INFO [2022-12-28 21:59:42.331][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-12-28 21:59:42.332][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:42.333][biodb::testThat]
biodb.TRACE[2022-12-28 21:59:42.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:42.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:42.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:42.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:42.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:42.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:42.448][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:42.453][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:42.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-12-28 21:59:42.457][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:42.460][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-12-28 21:59:42.487][biodb::testThat]
biodb.INFO [2022-12-28 21:59:42.489][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-12-28 21:59:42.491][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:42.493][biodb::testThat]
biodb.TRACE[2022-12-28 21:59:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:42.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:42.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:42.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 21:59:42.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 21:59:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 21:59:42.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 21:59:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-12-28 21:59:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-12-28 21:59:42.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-12-28 21:59:42.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-12-28 21:59:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:42.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:42.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:42.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 21:59:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 21:59:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 21:59:42.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 21:59:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-12-28 21:59:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-12-28 21:59:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:42.702][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-12-28 21:59:42.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-12-28 21:59:42.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:42.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:42.714][biodb::testThat]
biodb.INFO [2022-12-28 21:59:42.716][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-12-28 21:59:42.718][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:42.719][biodb::testThat]
biodb.INFO [2022-12-28 21:59:42.728][biodb::testThat]
biodb.INFO [2022-12-28 21:59:42.730][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-12-28 21:59:42.732][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:42.733][biodb::testThat]
biodb.INFO [2022-12-28 21:59:42.743][biodb::testThat]
biodb.INFO [2022-12-28 21:59:42.744][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-12-28 21:59:42.746][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:42.748][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:42.754][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-12-28 21:59:43.776][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-12-28 21:59:44.682][biodb::testThat]
biodb.INFO [2022-12-28 21:59:44.683][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-12-28 21:59:44.685][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:44.686][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:45.092][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2022-12-28 21:59:45.503][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:45.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:45.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.506][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:45.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:45.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.517][ef$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:45.521][biodb::testThat]
biodb.INFO [2022-12-28 21:59:45.522][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-12-28 21:59:45.523][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:45.524][biodb::testThat]
biodb.TRACE[2022-12-28 21:59:45.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:45.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:45.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:45.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:45.628][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:45.631][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:45.632][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-12-28 21:59:45.634][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:45.635][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-12-28 21:59:45.707][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:45.711][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:45.712][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-12-28 21:59:45.714][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:45.715][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-12-28 21:59:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 21:59:45.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 21:59:45.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:45.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:45.819][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:45.823][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:45.824][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-12-28 21:59:45.826][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:45.833][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-12-28 21:59:45.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:45.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:45.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:45.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:45.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:45.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:45.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:45.848][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2022-12-28 21:59:45.887][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:45.889][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2022-12-28 21:59:45.891][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:45.899][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2022-12-28 21:59:45.904][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:45.919][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:45.920][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:45.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:45.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:45.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:45.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:45.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:45.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:45.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:45.935][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:45.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:45.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.938][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:45.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:45.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.947][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:45.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:45.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.950][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.959][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:45.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:45.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.962][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.971][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:45.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:45.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.975][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.983][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:45.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:45.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.986][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.995][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:45.996][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:45.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:45.998][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:45.999][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:46.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.004][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.019][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.027][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:46.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:46.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.031][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:46.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:46.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.039][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:46.040][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:46.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.046][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:46.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:46.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:46.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.058][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:46.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:46.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.116][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2022-12-28 21:59:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.143][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:46.146][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:46.148][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-12-28 21:59:46.149][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:46.156][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-12-28 21:59:46.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:46.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.199][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:46.202][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:46.204][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-12-28 21:59:46.205][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:46.214][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-12-28 21:59:46.259][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:46.262][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:46.264][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-12-28 21:59:46.265][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:46.267][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-12-28 21:59:46.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:46.323][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-12-28 21:59:46.324][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:46.326][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-12-28 21:59:46.328][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:46.336][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2022-12-28 21:59:46.341][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:46.356][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:46.357][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:46.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:46.372][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.375][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.384][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:46.385][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:46.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.387][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.389][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:46.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:46.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.392][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.393][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:46.394][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:46.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.396][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:46.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:46.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.401][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.402][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:46.403][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:46.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.405][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.407][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:46.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.410][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.414][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.415][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:46.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:46.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.418][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:46.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:46.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.427][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:46.428][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:46.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.430][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:46.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:46.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.439][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:46.440][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:46.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.442][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.493][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-12-28 21:59:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:46.528][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-12-28 21:59:46.529][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:46.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-12-28 21:59:46.533][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:46.540][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2022-12-28 21:59:46.541][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:46.556][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:46.557][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:46.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:46.573][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.576][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.586][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:46.587][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:46.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.589][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.590][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:46.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:46.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.593][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.595][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:46.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:46.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.598][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.599][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:46.600][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:46.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.602][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:46.605][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:46.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.607][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.608][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:46.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.615][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.619][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.621][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:46.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:46.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.624][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:46.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.633][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:46.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:46.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.636][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:46.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.645][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:46.646][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:46.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.648][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.696][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-12-28 21:59:46.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:46.730][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-12-28 21:59:46.731][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:46.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-12-28 21:59:46.734][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:46.742][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2022-12-28 21:59:46.743][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:46.761][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:46.763][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:46.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:46.781][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.785][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.794][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:46.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:46.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.797][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.798][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:46.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:46.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.801][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:46.804][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:46.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.806][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:46.808][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.810][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:46.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:46.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.815][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.816][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:46.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.819][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:46.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.824][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.825][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:46.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:46.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.828][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:46.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.838][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:46.840][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:46.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.842][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.853][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:46.854][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:46.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.856][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:46.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.907][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-12-28 21:59:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:46.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:46.941][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-12-28 21:59:46.943][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:46.944][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-12-28 21:59:46.947][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:46.955][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2022-12-28 21:59:46.956][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:46.971][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:46.972][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:46.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:46.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:46.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:46.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:46.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:46.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:46.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:46.988][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.991][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.000][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:47.001][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:47.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.003][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.011][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:47.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:47.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.014][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:47.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:47.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:47.025][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:47.026][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.027][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:47.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.059][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.071][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.072][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.080][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:47.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.083][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.085][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:47.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.096][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.104][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:47.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:47.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.108][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:47.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:47.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.117][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:47.118][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:47.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.120][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:47.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:47.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.129][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:47.130][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:47.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.132][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:47.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:47.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:47.188][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-12-28 21:59:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:47.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:47.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:47.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:47.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:47.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:47.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:47.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:47.220][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-12-28 21:59:47.221][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:47.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-12-28 21:59:47.224][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:47.232][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2022-12-28 21:59:47.233][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:47.248][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:47.249][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:47.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:47.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:47.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:47.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:47.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:47.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:47.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:47.265][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.268][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.277][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:47.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:47.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.280][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:47.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:47.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.289][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:47.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:47.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.292][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:47.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:47.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:47.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.305][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:47.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.314][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.318][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.326][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.327][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.330][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.338][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:47.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.341][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.358][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.367][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:47.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:47.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.370][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.379][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:47.380][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:47.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.382][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:47.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.391][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:47.392][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:47.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.394][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:47.449][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-12-28 21:59:47.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:47.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:47.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:47.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:47.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:47.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:47.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:47.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:47.488][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-12-28 21:59:47.489][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:47.490][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-12-28 21:59:47.502][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:47.510][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2022-12-28 21:59:47.512][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:47.531][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:47.532][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:47.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:47.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:47.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:47.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:47.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:47.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:47.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:47.547][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.550][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.559][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:47.560][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:47.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.562][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.571][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:47.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:47.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.574][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:47.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:47.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.586][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.598][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.610][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.611][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:47.612][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.614][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.615][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:47.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.626][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.634][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:47.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:47.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.637][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:47.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.646][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:47.647][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:47.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.649][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:47.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.662][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:47.663][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:47.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.665][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:47.719][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-12-28 21:59:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:47.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:47.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:47.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:47.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:47.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:47.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:47.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:47.744][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-12-28 21:59:47.745][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:47.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-12-28 21:59:47.749][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:47.757][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2022-12-28 21:59:47.758][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:47.772][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:47.774][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:47.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:47.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:47.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:47.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:47.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:47.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:47.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:47.789][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.797][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.807][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:47.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:47.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.810][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:47.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.819][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:47.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:47.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.822][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:47.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:47.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.834][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:47.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.842][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.846][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:47.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:47.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.857][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.859][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:47.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.862][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:47.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.873][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:47.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.882][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:47.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:47.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.885][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:47.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.894][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:47.895][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:47.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.897][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.898][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.906][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:47.907][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:47.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.909][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:47.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:47.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:47.968][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-12-28 21:59:47.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:47.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:47.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:47.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:47.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:47.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:47.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:47.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:47.994][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-12-28 21:59:47.995][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:47.997][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-12-28 21:59:47.999][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:48.009][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2022-12-28 21:59:48.010][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:48.025][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:48.027][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:48.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:48.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:48.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:48.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:48.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:48.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:48.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:48.042][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.045][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.055][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:48.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:48.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.058][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:48.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:48.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.067][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:48.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:48.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.071][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:48.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:48.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:48.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.088][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.102][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:48.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:48.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.116][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.117][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:48.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.121][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.130][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.133][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.134][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.143][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:48.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:48.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.146][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.155][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:48.156][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:48.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.158][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:48.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:48.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:48.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.170][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:48.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:48.226][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-12-28 21:59:48.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:48.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:48.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:48.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:48.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:48.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:48.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:48.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:48.256][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-12-28 21:59:48.257][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:48.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-12-28 21:59:48.261][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:48.271][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2022-12-28 21:59:48.272][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:48.290][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:48.291][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:48.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:48.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:48.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:48.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:48.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:48.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:48.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:48.306][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.310][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.318][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:48.320][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:48.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.322][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:48.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.330][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:48.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:48.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.334][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:48.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:48.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:48.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.345][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:48.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:48.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.357][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.366][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:48.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:48.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.369][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.370][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:48.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.373][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.387][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.391][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.399][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:48.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:48.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.403][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:48.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:48.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.415][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:48.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:48.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.420][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:48.436][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:48.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.439][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:48.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:48.502][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-12-28 21:59:48.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:48.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:48.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:48.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:48.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:48.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:48.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:48.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:48.528][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-12-28 21:59:48.530][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:48.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-12-28 21:59:48.533][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:48.542][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2022-12-28 21:59:48.544][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:48.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:48.564][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:48.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:48.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:48.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:48.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:48.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:48.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:48.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:48.580][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.584][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.592][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:48.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:48.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.596][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:48.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:48.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.604][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:48.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:48.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.607][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:48.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:48.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.619][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:48.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.631][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.640][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:48.641][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:48.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.643][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.644][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:48.645][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.648][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.658][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.659][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.662][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.672][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:48.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:48.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.675][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.683][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:48.685][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:48.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.687][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:48.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:48.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:48.702][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:48.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.705][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:48.759][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-12-28 21:59:48.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:48.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:48.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:48.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:48.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:48.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:48.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:48.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:48.786][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-12-28 21:59:48.787][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:48.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-12-28 21:59:48.790][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:48.798][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2022-12-28 21:59:48.799][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:48.814][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:48.815][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:48.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:48.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:48.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:48.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:48.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:48.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:48.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:48.831][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.839][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.848][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:48.850][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:48.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.852][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:48.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:48.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.861][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:48.862][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:48.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.864][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:48.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:48.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.876][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:48.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.880][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.882][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:48.883][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:48.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.885][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.886][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:48.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.889][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.891][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:48.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.898][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.901][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:48.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.910][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:48.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:48.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.913][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:48.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:48.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.922][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:48.924][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:48.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.926][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.927][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:48.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:48.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.934][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:48.935][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:48.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.937][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:48.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:48.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:48.988][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-12-28 21:59:48.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:48.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:48.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:49.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:49.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:49.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:49.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:49.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:49.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:49.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:49.014][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-12-28 21:59:49.015][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:49.016][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-12-28 21:59:49.018][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:49.026][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2022-12-28 21:59:49.027][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:49.041][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:49.043][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:49.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:49.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:49.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:49.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:49.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:49.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:49.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:49.057][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.061][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.070][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:49.071][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:49.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.073][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.074][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:49.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.081][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:49.083][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:49.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.085][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:49.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:49.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.096][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.097][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.100][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:49.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:49.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.105][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.106][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:49.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.109][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.125][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.133][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:49.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:49.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.137][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:49.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:49.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.145][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:49.146][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:49.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.148][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.150][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.157][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:49.158][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.160][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:49.206][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-12-28 21:59:49.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:49.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:49.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:49.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:49.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:49.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:49.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:49.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:49.233][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-12-28 21:59:49.234][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:49.236][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-12-28 21:59:49.238][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:49.245][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2022-12-28 21:59:49.247][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:49.265][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:49.267][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:49.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:49.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:49.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:49.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:49.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:49.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:49.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:49.282][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.285][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.294][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:49.295][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:49.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.297][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:49.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.307][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:49.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:49.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.310][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:49.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:49.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.322][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.334][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.343][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:49.344][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:49.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.346][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.348][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:49.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.351][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.352][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:49.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.363][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.376][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:49.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:49.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.381][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:49.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:49.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:49.397][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:49.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.400][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:49.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.419][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:49.421][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:49.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.424][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:49.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:49.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:49.494][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-12-28 21:59:49.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:49.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:49.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:49.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:49.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:49.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:49.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:49.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:49.536][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-12-28 21:59:49.537][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:49.539][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-12-28 21:59:49.540][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:49.558][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2022-12-28 21:59:49.560][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:49.574][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:49.575][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:49.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:49.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:49.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:49.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:49.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:49.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:49.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:49.593][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.600][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.615][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:49.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:49.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.620][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:49.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:49.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.634][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:49.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:49.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.639][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:49.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:49.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:49.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:49.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.658][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:49.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.670][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.678][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:49.679][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:49.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.681][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.683][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:49.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.686][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.687][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:49.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.694][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.698][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.707][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:49.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:49.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.710][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:49.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:49.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.719][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:49.720][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:49.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.722][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:49.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:49.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.733][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:49.807][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-12-28 21:59:49.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:49.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:49.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:49.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:49.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:49.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:49.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:49.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:49.850][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-12-28 21:59:49.851][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:49.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-12-28 21:59:49.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:49.865][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2022-12-28 21:59:49.867][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:49.881][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:49.882][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:49.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:49.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:49.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:49.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:49.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:49.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:49.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:49.897][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.900][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:49.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:49.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.909][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:49.910][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:49.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.912][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:49.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.921][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:49.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:49.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.924][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:49.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:49.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:49.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:49.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.940][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.952][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:49.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.961][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:49.962][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:49.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.964][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.966][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:49.967][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.969][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:49.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.981][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:49.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.989][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:49.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:49.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.992][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:49.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:49.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.001][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:50.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:50.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.005][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.013][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:50.014][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:50.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.017][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:50.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:50.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:50.082][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-12-28 21:59:50.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:50.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:50.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:50.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:50.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:50.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:50.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:50.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:50.108][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-12-28 21:59:50.109][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:50.111][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-12-28 21:59:50.113][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:50.122][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2022-12-28 21:59:50.123][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:50.137][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:50.138][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:50.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:50.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:50.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:50.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:50.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:50.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:50.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:50.154][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.158][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.167][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:50.169][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:50.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.171][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.172][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:50.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.180][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:50.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:50.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.183][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:50.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:50.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:50.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:50.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.195][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:50.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:50.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:50.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:50.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.207][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:50.217][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:50.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.219][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.342][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:50.344][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.345][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:50.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:50.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:50.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.357][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:50.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:50.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.366][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:50.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:50.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.369][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:50.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:50.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.378][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:50.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:50.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.381][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:50.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:50.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.389][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:50.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:50.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.393][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:50.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:50.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:50.447][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-12-28 21:59:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:50.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:50.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:50.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:50.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:50.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:50.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:50.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:50.480][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-12-28 21:59:50.482][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:50.484][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-12-28 21:59:50.487][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:50.497][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2022-12-28 21:59:50.499][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:50.515][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:50.516][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:50.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:50.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:50.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:50.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:50.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:50.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:50.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:50.535][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.539][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.549][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:50.550][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:50.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.553][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:50.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.566][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:50.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:50.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.570][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:50.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:50.583][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:50.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.586][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:50.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.597][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:50.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:50.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.602][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:50.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:50.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:50.619][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:50.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.623][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.625][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:50.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.631][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:50.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:50.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:50.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.650][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:50.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.662][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:50.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:50.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.666][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:50.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.682][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:50.684][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:50.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.688][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:50.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:50.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.703][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:50.705][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:50.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.709][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:50.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:50.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:50.786][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-12-28 21:59:50.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:50.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:50.863][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:50.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-12-28 21:59:50.866][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:50.869][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-12-28 21:59:50.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:50.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:50.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:50.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:50.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:50.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:50.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:50.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:50.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:50.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:50.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:50.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:50.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:50.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:50.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:50.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:50.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:50.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:50.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:50.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:50.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:50.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:50.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:50.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:50.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:50.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:50.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:50.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:50.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:50.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:50.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:50.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:50.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.539][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:51.542][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:51.543][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2022-12-28 21:59:51.545][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:51.548][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2022-12-28 21:59:51.553][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:51.557][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:51.558][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2022-12-28 21:59:51.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:51.569][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2022-12-28 21:59:51.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:51.592][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-12-28 21:59:51.594][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:51.596][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-12-28 21:59:51.599][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:51.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2022-12-28 21:59:51.611][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:51.629][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:51.630][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:51.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.645][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.648][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.657][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:51.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:51.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.660][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:51.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.668][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:51.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:51.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.671][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:51.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:51.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.683][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:51.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:51.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.695][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:51.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.703][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:51.705][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:51.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.707][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.708][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:51.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:51.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.715][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:51.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.718][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.719][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.730][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.740][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:51.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:51.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.746][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:51.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.756][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:51.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:51.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.759][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:51.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.768][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:51.769][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:51.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.771][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:51.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:51.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:51.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.829][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-12-28 21:59:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:51.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:51.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:51.884][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-12-28 21:59:51.885][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:51.886][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-12-28 21:59:51.888][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:51.897][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2022-12-28 21:59:51.898][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:51.912][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:51.914][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:51.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:51.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:51.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:51.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:51.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:51.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:51.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:51.929][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.933][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:51.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:51.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.942][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:51.943][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:51.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.945][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.954][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:51.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:51.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.957][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:51.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:51.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:51.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:51.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.969][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:51.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:51.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:51.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:51.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.981][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:51.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:51.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:51.994][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:51.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:51.996][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:51.997][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:51.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:51.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.000][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.012][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.020][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:52.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:52.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.023][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:52.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:52.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.032][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:52.033][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:52.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.035][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.043][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:52.044][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:52.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.046][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:52.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:52.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:52.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:52.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:52.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:52.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:52.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:52.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:52.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:52.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:52.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:52.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:52.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.103][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-12-28 21:59:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.166][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:52.169][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:52.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-12-28 21:59:52.173][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:52.174][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-12-28 21:59:52.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.721][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:52.726][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:52.729][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-12-28 21:59:52.731][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:52.734][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-12-28 21:59:52.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:52.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:52.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:52.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:52.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:52.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:52.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:52.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-12-28 21:59:53.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-12-28 21:59:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:53.322][biodb::testThat]
biodb.INFO [2022-12-28 21:59:53.323][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-12-28 21:59:53.324][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:53.325][biodb::testThat]
biodb.TRACE[2022-12-28 21:59:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 21:59:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 21:59:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:53.412][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:53.417][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:53.420][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-12-28 21:59:53.422][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:53.425][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-12-28 21:59:53.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.455][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:53.458][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:53.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-12-28 21:59:53.461][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:53.463][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-12-28 21:59:53.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:53.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.495][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:53.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:53.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-12-28 21:59:53.500][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:53.502][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-12-28 21:59:53.504][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-12-28 21:59:53.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:53.527][private$selectFields]
biodb.TRACE[2022-12-28 21:59:53.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:53.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:53.530][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:53.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.534][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.538][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:53.540][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:53.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.544][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.545][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:53.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2022-12-28 21:59:53.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:53.597][private$selectFields]
biodb.TRACE[2022-12-28 21:59:53.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:53.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:53.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:53.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.609][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.616][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:53.619][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:53.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.625][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.627][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-12-28 21:59:53.643][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-12-28 21:59:53.644][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-12-28 21:59:53.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:53.778][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:53.784][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:53.786][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-12-28 21:59:53.788][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:53.792][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-12-28 21:59:53.797][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:53.802][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:53.803][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-12-28 21:59:53.804][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:53.807][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-12-28 21:59:53.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:53.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:53.957][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-12-28 21:59:53.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:53.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:53.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:53.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:53.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:53.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:53.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:53.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:53.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:53.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.003][private$selectFields]
biodb.TRACE[2022-12-28 21:59:54.004][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:54.006][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:54.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.008][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.009][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.011][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.015][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.017][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.021][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.022][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:54.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-12-28 21:59:54.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.083][private$selectFields]
biodb.TRACE[2022-12-28 21:59:54.085][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:54.086][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:54.087][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.091][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.095][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.104][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.109][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.110][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:54.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-12-28 21:59:54.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.147][private$selectFields]
biodb.TRACE[2022-12-28 21:59:54.148][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:54.149][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:54.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.155][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.159][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.161][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.165][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.166][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-12-28 21:59:54.186][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-12-28 21:59:54.187][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-12-28 21:59:54.196][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-12-28 21:59:54.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-12-28 21:59:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:54.202][biodb::testThat]
biodb.INFO [2022-12-28 21:59:54.203][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-12-28 21:59:54.204][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:54.205][biodb::testThat]
biodb.TRACE[2022-12-28 21:59:54.209][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 21:59:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 21:59:54.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:54.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:54.288][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:54.292][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:54.293][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-12-28 21:59:54.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:54.297][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-12-28 21:59:54.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:54.327][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:54.330][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:54.331][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-12-28 21:59:54.333][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:54.335][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-12-28 21:59:54.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:54.362][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:54.366][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:54.367][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-12-28 21:59:54.368][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:54.370][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-12-28 21:59:54.373][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-12-28 21:59:54.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.401][private$selectFields]
biodb.TRACE[2022-12-28 21:59:54.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:54.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:54.404][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.408][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.412][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.415][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.419][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.420][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2022-12-28 21:59:54.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.457][private$selectFields]
biodb.TRACE[2022-12-28 21:59:54.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:54.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:54.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.464][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.468][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.470][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.474][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.475][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:54.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-12-28 21:59:54.490][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-12-28 21:59:54.491][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-12-28 21:59:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:54.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:54.596][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:54.601][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:54.603][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-12-28 21:59:54.604][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:54.606][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-12-28 21:59:54.609][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:54.612][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:54.614][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-12-28 21:59:54.615][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:54.617][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-12-28 21:59:54.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:54.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:54.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:54.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:54.707][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-12-28 21:59:54.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.731][private$selectFields]
biodb.TRACE[2022-12-28 21:59:54.732][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:54.733][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:54.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.740][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.747][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.750][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.755][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.757][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:54.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.776][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-12-28 21:59:54.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.802][private$selectFields]
biodb.TRACE[2022-12-28 21:59:54.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:54.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:54.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.810][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.815][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.818][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.822][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.823][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:54.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.837][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-12-28 21:59:54.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.861][private$selectFields]
biodb.TRACE[2022-12-28 21:59:54.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:54.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:54.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.868][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.872][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.873][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.875][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:54.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.880][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.881][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:54.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-12-28 21:59:54.902][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-12-28 21:59:54.903][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-12-28 21:59:54.913][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-12-28 21:59:54.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-12-28 21:59:54.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:54.920][biodb::testThat]
biodb.INFO [2022-12-28 21:59:54.921][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-12-28 21:59:54.922][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:54.923][biodb::testThat]
biodb.TRACE[2022-12-28 21:59:54.926][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 21:59:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 21:59:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:54.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:54.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:54.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:54.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:54.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:54.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:54.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:55.015][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:55.020][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:55.023][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2022-12-28 21:59:55.025][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:55.028][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2022-12-28 21:59:55.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:55.059][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:55.062][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:55.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2022-12-28 21:59:55.065][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:55.066][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2022-12-28 21:59:55.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:55.098][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:55.102][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:55.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2022-12-28 21:59:55.107][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:55.109][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2022-12-28 21:59:55.113][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2022-12-28 21:59:55.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.146][private$selectFields]
biodb.TRACE[2022-12-28 21:59:55.147][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:55.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:55.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.156][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.163][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.166][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.172][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.173][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2022-12-28 21:59:55.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.231][private$selectFields]
biodb.TRACE[2022-12-28 21:59:55.233][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:55.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:55.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.242][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.249][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.252][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.258][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.260][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-12-28 21:59:55.283][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2022-12-28 21:59:55.285][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-12-28 21:59:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:55.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:55.445][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:55.450][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:55.452][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2022-12-28 21:59:55.454][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:55.457][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2022-12-28 21:59:55.462][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:55.466][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:55.468][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2022-12-28 21:59:55.471][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:55.473][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2022-12-28 21:59:55.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:55.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:55.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:55.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:55.597][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-12-28 21:59:55.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.633][private$selectFields]
biodb.TRACE[2022-12-28 21:59:55.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:55.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:55.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.645][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.651][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.655][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.661][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.663][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:55.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-12-28 21:59:55.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.709][private$selectFields]
biodb.TRACE[2022-12-28 21:59:55.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:55.711][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:55.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.717][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.721][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.723][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.726][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.727][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.728][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-12-28 21:59:55.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.775][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.777][private$selectFields]
biodb.TRACE[2022-12-28 21:59:55.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-12-28 21:59:55.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-12-28 21:59:55.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.787][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.792][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.795][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-12-28 21:59:55.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.801][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.802][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-12-28 21:59:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:55.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-12-28 21:59:55.821][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-12-28 21:59:55.823][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-12-28 21:59:55.851][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-12-28 21:59:55.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-12-28 21:59:55.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:55.858][biodb::testThat]
biodb.INFO [2022-12-28 21:59:55.859][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2022-12-28 21:59:55.861][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:55.862][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:55.865][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-12-28 21:59:55.866][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:55.868][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-12-28 21:59:55.870][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:55.881][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2022-12-28 21:59:55.883][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:55.913][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:55.915][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:55.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:55.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:55.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:55.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:55.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:55.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:55.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:55.942][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:55.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:55.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.948][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:55.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:55.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.964][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:55.966][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:55.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.970][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.972][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:55.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:55.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.978][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:55.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:55.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.986][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:55.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:55.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:55.994][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:55.997][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:55.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.003][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.005][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:56.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:56.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.011][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.019][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.021][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:56.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:56.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.027][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.030][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:56.032][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:56.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.036][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:56.040][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:56.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.044][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:56.118][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2022-12-28 21:59:56.119][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2022-12-28 21:59:56.130][biodb::testThat]
biodb.INFO [2022-12-28 21:59:56.132][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-12-28 21:59:56.133][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:56.135][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:56.149][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2022-12-28 21:59:56.151][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2022-12-28 21:59:56.152][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-12-28 21:59:56.155][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2022-12-28 21:59:56.157][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-12-28 21:59:56.182][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2022-12-28 21:59:56.183][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:56.198][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-12-28 21:59:56.199][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:56.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:56.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:56.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:56.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:56.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:56.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:56.214][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.217][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.226][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:56.227][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:56.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.229][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.230][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:56.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:56.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.234][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:56.236][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:56.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.238][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.242][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.244][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.245][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.247][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.248][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:56.249][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:56.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.251][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.255][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.257][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:56.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:56.259][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.260][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.261][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:56.262][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:56.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.264][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.265][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:56.266][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:56.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.268][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:56.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:56.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:56.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:56.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:56.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:56.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:56.315][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.318][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.327][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:56.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:56.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.330][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:56.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:56.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.339][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:56.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:56.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.342][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:56.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:56.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:56.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:56.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.354][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:56.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:56.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.369][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.378][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.379][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.381][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.389][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:56.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:56.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.393][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.394][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:56.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:56.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.404][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.413][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:56.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:56.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.416][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:56.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:56.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.425][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:56.427][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:56.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.429][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:56.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:56.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.441][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:56.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:56.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:56.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:56.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:56.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:56.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:56.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:56.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:56.499][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.502][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.511][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:56.512][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:56.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.514][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:56.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:56.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.523][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:56.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:56.525][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.526][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:56.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:56.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:56.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:56.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.538][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:56.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:56.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.549][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:56.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.558][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.559][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.561][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:56.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.570][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:56.571][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:56.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.573][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.574][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:56.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.584][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.593][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:56.594][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:56.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.596][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:56.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:56.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:56.606][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:56.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.608][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:56.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:56.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.616][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:56.617][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:56.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.619][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:56.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:56.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:56.716][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2022-12-28 21:59:56.717][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2022-12-28 21:59:56.718][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2022-12-28 21:59:56.731][biodb::testThat]
biodb.INFO [2022-12-28 21:59:56.736][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2022-12-28 21:59:56.737][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:56.738][biodb::testThat]
biodb.INFO [2022-12-28 21:59:56.758][biodb::testThat]
biodb.INFO [2022-12-28 21:59:56.759][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2022-12-28 21:59:56.760][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:56.761][biodb::testThat]
biodb.INFO [2022-12-28 21:59:56.769][biodb::testThat]
biodb.INFO [2022-12-28 21:59:56.770][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2022-12-28 21:59:56.771][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:56.772][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:56.775][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:56.779][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:56.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2022-12-28 21:59:56.781][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:56.789][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2022-12-28 21:59:56.805][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:56.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:56.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.809][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:56.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:56.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:56.813][ef$get] fields variable is a list.
biodb.INFO [2022-12-28 21:59:56.815][biodb::testThat]
biodb.INFO [2022-12-28 21:59:56.816][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2022-12-28 21:59:56.817][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:56.818][biodb::testThat]
biodb.ERROR[2022-12-28 21:59:56.831][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2022-12-28 21:59:56.843][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2022-12-28 21:59:56.850][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-12-28 21:59:56.851][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-12-28 21:59:56.853][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-12-28 21:59:56.854][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-12-28 21:59:56.855][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:56.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:56.857][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:56.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:56.859][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-12-28 21:59:56.870][biodb::testContext]
biodb.INFO [2022-12-28 21:59:56.872][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 21:59:56.873][biodb::testContext] Test context - Test conversions
biodb.INFO [2022-12-28 21:59:56.874][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 21:59:56.875][biodb::testContext]
biodb.INFO [2022-12-28 21:59:56.880][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2022-12-28 21:59:56.882][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-12-28 21:59:56.887][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:56.888][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-12-28 21:59:56.889][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-12-28 21:59:56.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.893][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-12-28 21:59:56.894][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-12-28 21:59:56.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.898][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-12-28 21:59:56.900][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-12-28 21:59:56.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.903][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-12-28 21:59:56.905][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-12-28 21:59:56.906][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-12-28 21:59:56.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.909][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-12-28 21:59:56.910][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-12-28 21:59:56.912][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-12-28 21:59:56.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.915][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-12-28 21:59:56.916][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-12-28 21:59:56.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.920][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-12-28 21:59:56.921][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-12-28 21:59:56.922][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-12-28 21:59:56.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.926][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-12-28 21:59:56.927][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-12-28 21:59:56.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.931][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-12-28 21:59:56.932][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-12-28 21:59:56.933][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-12-28 21:59:56.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.937][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-12-28 21:59:56.938][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-12-28 21:59:56.939][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-12-28 21:59:56.940][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-12-28 21:59:56.941][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-12-28 21:59:56.942][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-12-28 21:59:56.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.946][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-12-28 21:59:56.947][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-12-28 21:59:56.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.951][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-12-28 21:59:56.952][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-12-28 21:59:56.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.956][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-12-28 21:59:56.957][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-12-28 21:59:56.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.960][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-12-28 21:59:56.961][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-12-28 21:59:56.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.965][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-12-28 21:59:56.966][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-12-28 21:59:56.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.970][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-12-28 21:59:56.971][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-12-28 21:59:56.974][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-12-28 21:59:56.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.978][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-12-28 21:59:56.979][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-12-28 21:59:56.980][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-12-28 21:59:56.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:56.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:56.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:56.984][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-12-28 21:59:56.986][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:56.987][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-12-28 21:59:56.988][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:56.989][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:56.990][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:56.991][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:56.993][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:56.994][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:56.995][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 21:59:56.996][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:56.997][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:56.998][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-12-28 21:59:56.999][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:57.000][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.001][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.002][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:57.002][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:57.002][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:57.002][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 21:59:57.002][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 21:59:57.003][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:57.004][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.005][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.006][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:57.007][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.008][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.009][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.010][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.011][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:57.012][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:57.013][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.014][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.015][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-12-28 21:59:57.017][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.018][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 21:59:57.019][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.020][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:57.021][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.022][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.023][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.024][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.025][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 21:59:57.026][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:57.027][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.028][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-12-28 21:59:57.029][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:57.030][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.031][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.032][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:57.032][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:57.032][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:57.032][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 21:59:57.032][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 21:59:57.034][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:57.035][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.036][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.037][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:57.038][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.039][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.040][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.041][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.042][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:57.042][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:57.044][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.045][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.046][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-12-28 21:59:57.048][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.049][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-12-28 21:59:57.050][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.051][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:57.052][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.053][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.054][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.055][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.056][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 21:59:57.057][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:57.058][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.059][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-12-28 21:59:57.060][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:57.062][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.063][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.068][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.069][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:57.070][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.071][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.072][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:57.073][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.074][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.075][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.076][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.077][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:57.078][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:57.079][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.080][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.081][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-12-28 21:59:57.083][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.084][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 21:59:57.085][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.086][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:57.087][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.088][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.089][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.090][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.091][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 21:59:57.092][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:57.093][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.094][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-12-28 21:59:57.095][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:57.096][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.097][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.098][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.099][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:57.100][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.101][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.102][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:57.103][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.104][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.105][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.106][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:57.108][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:57.109][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.110][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.112][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:57.113][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.194][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-12-28 21:59:57.195][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-12-28 21:59:57.197][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-12-28 21:59:57.198][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-12-28 21:59:57.199][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 21:59:57.201][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 21:59:57.202][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-12-28 21:59:57.204][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-12-28 21:59:57.205][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-12-28 21:59:57.206][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 21:59:57.208][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 21:59:57.209][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-12-28 21:59:57.210][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-12-28 21:59:57.212][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-12-28 21:59:57.213][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-12-28 21:59:57.214][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 21:59:57.216][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-12-28 21:59:57.217][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-12-28 21:59:57.218][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 21:59:57.220][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-12-28 21:59:57.221][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-12-28 21:59:57.223][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-12-28 21:59:57.224][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-12-28 21:59:57.225][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-12-28 21:59:57.227][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-12-28 21:59:57.228][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-12-28 21:59:57.229][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-12-28 21:59:57.231][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-12-28 21:59:57.232][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-12-28 21:59:57.233][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-12-28 21:59:57.235][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-12-28 21:59:57.236][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-12-28 21:59:57.238][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-12-28 21:59:57.239][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-12-28 21:59:57.240][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-12-28 21:59:57.242][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-12-28 21:59:57.243][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-12-28 21:59:57.244][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-12-28 21:59:57.246][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-12-28 21:59:57.247][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-12-28 21:59:57.248][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-12-28 21:59:57.250][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-12-28 21:59:57.251][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-12-28 21:59:57.253][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-12-28 21:59:57.254][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-12-28 21:59:57.255][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-12-28 21:59:57.257][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-12-28 21:59:57.258][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-12-28 21:59:57.259][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-12-28 21:59:57.261][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-12-28 21:59:57.262][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-12-28 21:59:57.264][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-12-28 21:59:57.265][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-12-28 21:59:57.266][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-12-28 21:59:57.268][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-12-28 21:59:57.269][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-12-28 21:59:57.270][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-12-28 21:59:57.272][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-12-28 21:59:57.273][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-12-28 21:59:57.274][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-12-28 21:59:57.276][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-12-28 21:59:57.277][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-12-28 21:59:57.278][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-12-28 21:59:57.280][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-12-28 21:59:57.281][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-12-28 21:59:57.283][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-12-28 21:59:57.284][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 21:59:57.285][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 21:59:57.287][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-12-28 21:59:57.288][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-12-28 21:59:57.289][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-12-28 21:59:57.291][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-12-28 21:59:57.292][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-12-28 21:59:57.294][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-12-28 21:59:57.295][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-12-28 21:59:57.296][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-12-28 21:59:57.298][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-12-28 21:59:57.299][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-12-28 21:59:57.300][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-12-28 21:59:57.302][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-12-28 21:59:57.303][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-12-28 21:59:57.304][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-12-28 21:59:57.306][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-12-28 21:59:57.307][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-12-28 21:59:57.309][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2022-12-28 21:59:57.310][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:57.311][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.313][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.432][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-12-28 21:59:57.434][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-12-28 21:59:57.436][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.437][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.438][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.440][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:57.441][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.442][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.443][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.444][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-12-28 21:59:57.445][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-12-28 21:59:57.446][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:57.447][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.448][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-12-28 21:59:57.449][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-12-28 21:59:57.451][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-12-28 21:59:57.452][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.453][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:57.453][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:57.453][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:57.454][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-12-28 21:59:57.455][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.456][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.457][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:57.458][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.459][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.460][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.461][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-12-28 21:59:57.461][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-12-28 21:59:57.462][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:57.463][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:57.464][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.465][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-12-28 21:59:57.465][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-12-28 21:59:57.467][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 21:59:57.469][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 21:59:57.471][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-12-28 21:59:57.472][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 21:59:57.473][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 21:59:57.475][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 21:59:57.478][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-12-28 21:59:57.479][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-12-28 21:59:57.481][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-12-28 21:59:57.483][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-12-28 21:59:57.484][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 21:59:57.485][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 21:59:57.486][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-12-28 21:59:57.487][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-12-28 21:59:57.489][biodb::testThat]
biodb.INFO [2022-12-28 21:59:57.490][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2022-12-28 21:59:57.491][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:57.492][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:57.496][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-12-28 21:59:57.500][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.502][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-12-28 21:59:57.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.506][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-12-28 21:59:57.509][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:57.513][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.514][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-12-28 21:59:57.516][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.526][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-12-28 21:59:57.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.541][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:57.544][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.545][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-12-28 21:59:57.547][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.555][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-12-28 21:59:57.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.596][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:57.600][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-12-28 21:59:57.603][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.605][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-12-28 21:59:57.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.620][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:57.623][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-12-28 21:59:57.626][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.628][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-12-28 21:59:57.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.656][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:57.659][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-12-28 21:59:57.662][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.665][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-12-28 21:59:57.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:57.682][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-12-28 21:59:57.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.687][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-12-28 21:59:57.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:57.704][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.706][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2022-12-28 21:59:57.707][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.715][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2022-12-28 21:59:57.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-12-28 21:59:57.731][biodb::testThat]
biodb.INFO [2022-12-28 21:59:57.732][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2022-12-28 21:59:57.733][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:57.734][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:57.737][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:57.741][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.742][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2022-12-28 21:59:57.744][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.759][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2022-12-28 21:59:57.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:57.790][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:57.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2022-12-28 21:59:57.794][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:57.797][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2022-12-28 21:59:57.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:57.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-12-28 21:59:57.816][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-12-28 21:59:57.817][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-12-28 21:59:57.819][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-12-28 21:59:57.820][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-12-28 21:59:57.820][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:57.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:57.823][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:57.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:57.826][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-12-28 21:59:57.835][biodb::testContext]
biodb.INFO [2022-12-28 21:59:57.837][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 21:59:57.839][biodb::testContext] Test context - Test web services
biodb.INFO [2022-12-28 21:59:57.841][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 21:59:57.842][biodb::testContext]
biodb.INFO [2022-12-28 21:59:57.851][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2022-12-28 21:59:57.854][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-12-28 21:59:57.862][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:57.864][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-12-28 21:59:57.866][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-12-28 21:59:57.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.872][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-12-28 21:59:57.873][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-12-28 21:59:57.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.877][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-12-28 21:59:57.878][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-12-28 21:59:57.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.882][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-12-28 21:59:57.883][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-12-28 21:59:57.884][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-12-28 21:59:57.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.888][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-12-28 21:59:57.889][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-12-28 21:59:57.890][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-12-28 21:59:57.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.894][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-12-28 21:59:57.895][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-12-28 21:59:57.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.899][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-12-28 21:59:57.900][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-12-28 21:59:57.901][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-12-28 21:59:57.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.905][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-12-28 21:59:57.906][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-12-28 21:59:57.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.910][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-12-28 21:59:57.911][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-12-28 21:59:57.912][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-12-28 21:59:57.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.916][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-12-28 21:59:57.917][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-12-28 21:59:57.918][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-12-28 21:59:57.919][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-12-28 21:59:57.920][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-12-28 21:59:57.921][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-12-28 21:59:57.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.925][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-12-28 21:59:57.926][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-12-28 21:59:57.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.930][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-12-28 21:59:57.931][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-12-28 21:59:57.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.935][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-12-28 21:59:57.936][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-12-28 21:59:57.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.940][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-12-28 21:59:57.941][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-12-28 21:59:57.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.945][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-12-28 21:59:57.946][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-12-28 21:59:57.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.950][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-12-28 21:59:57.951][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-12-28 21:59:57.954][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-12-28 21:59:57.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.958][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-12-28 21:59:57.959][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-12-28 21:59:57.960][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-12-28 21:59:57.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:57.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:57.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:57.964][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-12-28 21:59:57.966][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.967][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-12-28 21:59:57.968][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.969][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:57.970][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.972][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.974][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:57.975][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:57.977][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 21:59:57.978][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:57.980][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.981][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-12-28 21:59:57.982][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:57.984][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:57.985][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:57.987][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:57.987][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:57.987][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:57.987][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 21:59:57.987][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 21:59:57.989][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:57.991][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.992][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.994][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:57.996][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:57.997][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:57.999][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.001][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.002][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:58.004][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:58.005][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.007][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.009][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-12-28 21:59:58.012][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.013][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 21:59:58.014][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.015][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:58.016][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.017][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.018][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.019][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.020][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 21:59:58.021][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:58.022][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.023][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-12-28 21:59:58.024][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:58.025][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.026][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.027][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:58.027][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:58.027][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:58.027][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 21:59:58.027][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 21:59:58.029][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:58.030][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.031][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.032][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:58.033][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.034][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.035][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.036][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.037][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:58.038][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:58.039][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.040][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.041][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-12-28 21:59:58.043][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.044][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-12-28 21:59:58.045][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.046][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:58.047][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.048][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.049][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.051][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.052][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 21:59:58.053][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:58.055][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.056][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-12-28 21:59:58.057][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:58.058][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.059][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.061][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.062][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:58.064][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.065][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.067][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:58.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.070][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.072][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.073][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.075][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:58.076][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:58.078][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.079][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.081][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-12-28 21:59:58.084][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.086][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 21:59:58.087][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.089][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:58.090][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.092][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.094][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.095][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.097][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 21:59:58.099][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:58.100][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.102][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-12-28 21:59:58.104][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:58.105][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.107][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.109][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.111][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:58.112][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.114][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.116][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:58.118][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.119][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.121][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.123][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.124][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:58.126][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:58.128][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.129][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.132][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:58.133][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.254][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-12-28 21:59:58.255][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-12-28 21:59:58.257][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-12-28 21:59:58.258][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-12-28 21:59:58.259][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 21:59:58.261][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 21:59:58.262][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-12-28 21:59:58.264][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-12-28 21:59:58.266][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-12-28 21:59:58.267][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 21:59:58.268][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 21:59:58.270][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-12-28 21:59:58.271][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-12-28 21:59:58.273][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-12-28 21:59:58.274][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-12-28 21:59:58.276][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 21:59:58.277][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-12-28 21:59:58.278][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-12-28 21:59:58.280][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 21:59:58.281][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-12-28 21:59:58.283][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-12-28 21:59:58.284][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-12-28 21:59:58.286][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-12-28 21:59:58.287][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-12-28 21:59:58.289][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-12-28 21:59:58.290][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-12-28 21:59:58.291][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-12-28 21:59:58.293][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-12-28 21:59:58.294][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-12-28 21:59:58.295][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-12-28 21:59:58.297][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-12-28 21:59:58.299][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-12-28 21:59:58.300][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-12-28 21:59:58.301][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-12-28 21:59:58.303][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-12-28 21:59:58.304][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-12-28 21:59:58.305][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-12-28 21:59:58.307][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-12-28 21:59:58.309][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-12-28 21:59:58.310][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-12-28 21:59:58.311][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-12-28 21:59:58.313][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-12-28 21:59:58.314][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-12-28 21:59:58.316][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-12-28 21:59:58.317][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-12-28 21:59:58.319][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-12-28 21:59:58.320][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-12-28 21:59:58.322][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-12-28 21:59:58.323][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-12-28 21:59:58.325][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-12-28 21:59:58.326][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-12-28 21:59:58.328][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-12-28 21:59:58.330][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-12-28 21:59:58.331][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-12-28 21:59:58.333][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-12-28 21:59:58.334][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-12-28 21:59:58.335][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-12-28 21:59:58.337][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-12-28 21:59:58.338][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-12-28 21:59:58.340][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-12-28 21:59:58.342][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-12-28 21:59:58.344][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-12-28 21:59:58.346][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-12-28 21:59:58.349][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-12-28 21:59:58.351][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-12-28 21:59:58.353][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-12-28 21:59:58.355][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 21:59:58.358][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 21:59:58.360][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-12-28 21:59:58.362][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-12-28 21:59:58.364][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-12-28 21:59:58.367][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-12-28 21:59:58.369][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-12-28 21:59:58.371][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-12-28 21:59:58.374][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-12-28 21:59:58.376][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-12-28 21:59:58.378][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-12-28 21:59:58.380][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-12-28 21:59:58.383][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-12-28 21:59:58.385][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-12-28 21:59:58.387][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-12-28 21:59:58.390][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-12-28 21:59:58.392][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-12-28 21:59:58.394][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-12-28 21:59:58.396][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2022-12-28 21:59:58.397][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:58.398][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.400][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.528][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-12-28 21:59:58.530][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-12-28 21:59:58.533][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.535][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.536][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.537][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:58.539][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.540][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.541][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.542][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-12-28 21:59:58.543][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-12-28 21:59:58.544][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:58.545][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.546][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-12-28 21:59:58.547][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-12-28 21:59:58.548][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-12-28 21:59:58.549][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.550][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:58.550][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:58.550][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:58.551][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-12-28 21:59:58.552][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.553][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.554][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:58.555][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.556][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.557][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.569][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-12-28 21:59:58.569][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-12-28 21:59:58.571][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:58.572][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:58.573][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.575][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-12-28 21:59:58.575][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-12-28 21:59:58.577][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 21:59:58.579][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 21:59:58.581][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-12-28 21:59:58.582][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 21:59:58.584][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 21:59:58.585][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 21:59:58.588][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-12-28 21:59:58.589][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-12-28 21:59:58.591][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-12-28 21:59:58.592][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-12-28 21:59:58.594][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 21:59:58.595][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 21:59:58.596][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-12-28 21:59:58.597][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-12-28 21:59:58.599][biodb::testThat]
biodb.INFO [2022-12-28 21:59:58.600][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2022-12-28 21:59:58.601][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:58.602][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:58.605][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-12-28 21:59:58.609][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:58.611][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-12-28 21:59:58.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:58.615][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-12-28 21:59:58.618][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:58.622][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:58.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2022-12-28 21:59:58.626][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:58.634][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2022-12-28 21:59:58.638][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-12-28 21:59:58.639][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-12-28 21:59:58.641][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-12-28 21:59:58.642][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-12-28 21:59:58.643][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:58.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:58.645][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.647][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-12-28 21:59:58.653][biodb::testContext]
biodb.INFO [2022-12-28 21:59:58.654][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 21:59:58.655][biodb::testContext] Test context - Non regression tests
biodb.INFO [2022-12-28 21:59:58.656][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 21:59:58.657][biodb::testContext]
biodb.INFO [2022-12-28 21:59:58.663][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2022-12-28 21:59:58.665][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-12-28 21:59:58.669][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:58.670][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-12-28 21:59:58.672][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-12-28 21:59:58.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.675][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-12-28 21:59:58.677][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-12-28 21:59:58.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.680][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-12-28 21:59:58.682][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-12-28 21:59:58.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.685][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-12-28 21:59:58.686][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-12-28 21:59:58.687][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-12-28 21:59:58.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.691][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-12-28 21:59:58.692][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-12-28 21:59:58.693][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-12-28 21:59:58.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.697][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-12-28 21:59:58.698][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-12-28 21:59:58.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.702][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-12-28 21:59:58.703][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-12-28 21:59:58.704][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-12-28 21:59:58.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.708][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-12-28 21:59:58.709][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-12-28 21:59:58.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.713][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-12-28 21:59:58.714][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-12-28 21:59:58.715][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-12-28 21:59:58.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.719][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-12-28 21:59:58.721][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-12-28 21:59:58.722][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-12-28 21:59:58.723][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-12-28 21:59:58.724][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-12-28 21:59:58.725][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-12-28 21:59:58.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.729][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-12-28 21:59:58.730][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-12-28 21:59:58.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.734][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-12-28 21:59:58.736][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-12-28 21:59:58.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.742][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-12-28 21:59:58.744][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-12-28 21:59:58.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.750][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-12-28 21:59:58.752][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-12-28 21:59:58.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.758][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-12-28 21:59:58.760][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-12-28 21:59:58.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.766][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-12-28 21:59:58.768][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-12-28 21:59:58.773][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-12-28 21:59:58.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.778][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-12-28 21:59:58.780][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-12-28 21:59:58.781][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-12-28 21:59:58.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.786][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-12-28 21:59:58.789][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.790][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-12-28 21:59:58.792][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.793][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:58.794][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.796][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.797][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.798][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.800][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 21:59:58.801][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:58.803][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.804][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-12-28 21:59:58.805][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:58.807][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.808][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.809][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:58.809][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:58.809][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:58.809][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 21:59:58.809][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 21:59:58.811][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:58.812][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.813][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.814][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:58.816][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.817][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.818][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.820][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.821][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:58.822][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:58.823][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.825][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.826][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-12-28 21:59:58.828][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.830][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 21:59:58.831][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.833][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:58.834][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.835][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.836][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.838][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.839][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 21:59:58.840][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:58.842][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.843][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-12-28 21:59:58.844][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:58.846][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.847][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.848][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:58.848][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:58.848][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:58.848][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 21:59:58.848][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 21:59:58.850][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:58.851][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.852][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.854][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:58.855][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.856][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.858][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.859][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.860][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:58.861][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:58.863][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.864][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.866][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-12-28 21:59:58.868][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.869][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-12-28 21:59:58.870][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.872][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:58.873][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.874][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.876][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.877][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.878][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 21:59:58.880][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:58.881][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.882][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-12-28 21:59:58.883][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:58.884][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.885][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.886][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.887][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:58.888][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.889][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.890][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:58.891][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.892][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.893][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.894][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.895][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:58.896][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:58.897][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.898][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.899][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-12-28 21:59:58.901][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.902][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 21:59:58.903][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.904][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:58.905][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.906][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.907][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.908][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.909][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 21:59:58.910][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:58.911][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.912][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-12-28 21:59:58.913][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:58.914][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.915][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:58.916][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.917][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 21:59:58.918][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.919][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.920][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:58.921][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:58.922][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:58.923][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:58.924][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.925][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:58.926][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:58.927][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:58.928][self$setPropertyValue]
biodb.DEBUG[2022-12-28 21:59:58.930][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:58.931][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:58.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:58.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:58.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:58.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:58.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.017][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-12-28 21:59:59.018][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-12-28 21:59:59.020][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-12-28 21:59:59.021][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-12-28 21:59:59.023][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 21:59:59.025][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 21:59:59.027][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-12-28 21:59:59.029][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-12-28 21:59:59.032][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-12-28 21:59:59.034][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 21:59:59.036][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 21:59:59.038][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-12-28 21:59:59.041][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-12-28 21:59:59.043][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-12-28 21:59:59.045][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-12-28 21:59:59.047][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 21:59:59.050][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-12-28 21:59:59.052][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-12-28 21:59:59.054][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 21:59:59.056][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-12-28 21:59:59.057][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-12-28 21:59:59.059][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-12-28 21:59:59.060][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-12-28 21:59:59.061][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-12-28 21:59:59.063][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-12-28 21:59:59.065][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-12-28 21:59:59.067][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-12-28 21:59:59.069][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-12-28 21:59:59.072][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-12-28 21:59:59.074][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-12-28 21:59:59.075][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-12-28 21:59:59.076][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-12-28 21:59:59.078][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-12-28 21:59:59.080][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-12-28 21:59:59.082][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-12-28 21:59:59.084][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-12-28 21:59:59.086][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-12-28 21:59:59.088][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-12-28 21:59:59.091][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-12-28 21:59:59.093][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-12-28 21:59:59.095][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-12-28 21:59:59.096][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-12-28 21:59:59.099][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-12-28 21:59:59.101][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-12-28 21:59:59.103][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-12-28 21:59:59.105][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-12-28 21:59:59.108][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-12-28 21:59:59.110][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-12-28 21:59:59.112][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-12-28 21:59:59.114][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-12-28 21:59:59.117][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-12-28 21:59:59.119][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-12-28 21:59:59.121][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-12-28 21:59:59.124][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-12-28 21:59:59.126][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-12-28 21:59:59.128][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-12-28 21:59:59.130][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-12-28 21:59:59.133][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-12-28 21:59:59.135][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-12-28 21:59:59.137][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-12-28 21:59:59.138][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-12-28 21:59:59.140][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-12-28 21:59:59.141][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-12-28 21:59:59.142][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-12-28 21:59:59.144][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-12-28 21:59:59.145][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-12-28 21:59:59.147][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 21:59:59.148][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 21:59:59.149][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-12-28 21:59:59.151][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-12-28 21:59:59.152][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-12-28 21:59:59.153][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-12-28 21:59:59.155][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-12-28 21:59:59.156][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-12-28 21:59:59.157][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-12-28 21:59:59.159][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-12-28 21:59:59.160][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-12-28 21:59:59.162][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-12-28 21:59:59.163][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-12-28 21:59:59.164][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-12-28 21:59:59.166][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-12-28 21:59:59.167][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-12-28 21:59:59.168][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-12-28 21:59:59.170][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-12-28 21:59:59.172][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2022-12-28 21:59:59.173][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 21:59:59.174][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.176][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 21:59:59.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 21:59:59.287][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-12-28 21:59:59.289][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-12-28 21:59:59.291][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:59.292][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-12-28 21:59:59.293][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:59.294][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 21:59:59.295][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:59.296][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 21:59:59.297][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:59.298][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-12-28 21:59:59.299][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-12-28 21:59:59.300][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 21:59:59.301][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:59.302][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-12-28 21:59:59.303][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-12-28 21:59:59.304][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-12-28 21:59:59.310][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-12-28 21:59:59.311][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 21:59:59.311][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 21:59:59.311][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 21:59:59.312][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-12-28 21:59:59.313][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:59.315][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:59.316][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 21:59:59.318][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 21:59:59.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 21:59:59.321][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 21:59:59.322][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-12-28 21:59:59.322][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-12-28 21:59:59.324][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 21:59:59.326][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 21:59:59.327][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-12-28 21:59:59.329][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-12-28 21:59:59.329][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-12-28 21:59:59.331][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 21:59:59.334][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 21:59:59.336][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-12-28 21:59:59.338][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 21:59:59.341][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 21:59:59.343][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 21:59:59.348][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-12-28 21:59:59.350][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-12-28 21:59:59.352][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-12-28 21:59:59.355][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-12-28 21:59:59.357][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 21:59:59.358][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 21:59:59.361][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-12-28 21:59:59.362][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-12-28 21:59:59.365][biodb::testThat]
biodb.INFO [2022-12-28 21:59:59.367][biodb::testThat] Running test function  test.chebi.encoding.issue.in.xml  (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2022-12-28 21:59:59.368][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 21:59:59.369][biodb::testThat]
biodb.DEBUG[2022-12-28 21:59:59.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-12-28 21:59:59.376][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:59.377][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-12-28 21:59:59.379][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:59.381][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-12-28 21:59:59.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-12-28 21:59:59.388][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-12-28 21:59:59.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2022-12-28 21:59:59.391][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:59.392][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2022-12-28 21:59:59.395][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2022-12-28 21:59:59.396][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-12-28 21:59:59.399][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2022-12-28 21:59:59.401][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 21:59:59.413][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2022-12-28 21:59:59.415][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 21:59:59.436][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-12-28 21:59:59.438][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-12-28 21:59:59.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 21:59:59.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 21:59:59.459][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:59.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:59.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.462][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:59.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:59.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.471][ef$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:59.472][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:59.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.474][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-12-28 21:59:59.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-12-28 21:59:59.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.483][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:59.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:59.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.487][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 21:59:59.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 21:59:59.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 21:59:59.497][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 21:59:59.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.499][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 21:59:59.502][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 21:59:59.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.504][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.505][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:59.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:59.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.508][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:59.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 21:59:59.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.517][ef$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:59.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:59.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.520][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.521][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-12-28 21:59:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-12-28 21:59:59.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:59.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:59.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.532][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:59.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 21:59:59.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.541][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:59.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:59.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.544][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 21:59:59.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 21:59:59.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.553][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:59.554][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:59.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.556][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.557][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-12-28 21:59:59.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-12-28 21:59:59.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:59.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:59.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.568][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 21:59:59.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 21:59:59.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:59.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:59.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:59.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:59.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:59.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:59.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 21:59:59.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 21:59:59.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:59.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:59.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:59.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:59.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:59.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:59.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:59.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:59.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:59.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 21:59:59.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 21:59:59.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 21:59:59.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 21:59:59.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 21:59:59.634][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2022-12-28 21:59:59.635][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-12-28 21:59:59.637][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-12-28 21:59:59.638][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-12-28 21:59:59.639][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-12-28 21:59:59.640][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 21:59:59.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 21:59:59.642][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 21:59:59.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 21:59:59.644][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 21:59:59.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 340 ]
> 
> proc.time()
   user  system elapsed 
  18.87    0.87   22.75

Example timings

biodbChebi.Rcheck/biodbChebi-Ex.timings

nameusersystemelapsed
ChebiConn2.581.203.82
ChebiEntry0.570.030.61