############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf XDE.buildbin-libdir && mkdir XDE.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=XDE.buildbin-libdir XDE_2.45.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'XDE' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.2.0' using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Cholesky.cpp -o Cholesky.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Matrix_v2.cpp -o Matrix_v2.o Matrix_v2.cpp: In function 'void matrixMult(const std::vector >&, const std::vector&, std::vector&)': Matrix_v2.cpp:244:7: warning: unused variable 'k' [-Wunused-variable] 244 | int k = 1; | ^ Matrix_v2.cpp:246:9: warning: unused variable 'j' [-Wunused-variable] 246 | int i,j,r; | ^ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Potential_v2.cpp -o Potential_v2.o Potential_v2.cpp: In function 'double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector > >&, const std::vector&, const std::vector >&)': Potential_v2.cpp:308:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 308 | for (k = 0; k < UBlocks.size(); k++) { | ~~^~~~~~~~~~~~~~~~ Potential_v2.cpp:310:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 310 | for (i = 0; i < UBlocks[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ Potential_v2.cpp:316:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 316 | for (k = 0; k < theGene.size(); k++) | ~~^~~~~~~~~~~~~~~~ Potential_v2.cpp:321:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 321 | for (i = 0; i < Omega[0].size(); i++) | ~~^~~~~~~~~~~~~~~~~ Potential_v2.cpp:322:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 322 | for (j = 0; j < UU[first].size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ Potential_v2.cpp:328:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 328 | for (k = 1; k < Omega.size(); k++) { | ~~^~~~~~~~~~~~~~ Potential_v2.cpp:329:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 329 | for (i = 0; i < oldComponents[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ Potential_v2.cpp:330:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 330 | for (j = 0; j < UU[first].size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ Potential_v2.cpp:335:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 335 | for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Potential_v2.cpp:336:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 336 | for (j = 0; j < UU[first].size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ Potential_v2.cpp:345:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 345 | for (k = 0; k < Omega.size(); k++) { | ~~^~~~~~~~~~~~~~ Potential_v2.cpp:347:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 347 | for (i = 0; i < theGene[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ Potential_v2.cpp:356:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 356 | for (k = 1; k < Omega.size(); k++) | ~~^~~~~~~~~~~~~~ Potential_v2.cpp:364:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 364 | for (i = 0; i < OmegaSub.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ Potential_v2.cpp:366:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 366 | for (j = 0; j < OmegaSub[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~ Potential_v2.cpp:369:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 369 | for (i = 0; i < USub.size(); i++) { | ~~^~~~~~~~~~~~~ Potential_v2.cpp:371:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 371 | for (j = 0; j < USub[i].size(); j++) | ~~^~~~~~~~~~~~~~~~ Potential_v2.cpp:374:41: warning: statement has no effect [-Wunused-value] 374 | if (theGene[k][i] == 1) include == 1; | ~~~~~~~~^~~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Random_v2.cpp -o Random_v2.o Random_v2.cpp: In member function 'int Random::Discrete(const std::vector&)': Random_v2.cpp:159:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 159 | for (i = 0; i < prob.size(); i++) | ~~^~~~~~~~~~~~~ Random_v2.cpp: In member function 'std::vector > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)': Random_v2.cpp:512:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 512 | for (i = 0; i < w.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:515:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 515 | for (j = 0; j < w[i].size(); j++) | ~~^~~~~~~~~~~~~ Random_v2.cpp: In member function 'std::vector > > Random::HyperInverseWishart(double, const std::vector > >&, const std::vector&, const std::vector >&)': Random_v2.cpp:548:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 548 | for (k = 0; k < D.size(); k++) { | ~~^~~~~~~~~~ Random_v2.cpp:551:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 551 | for (i = 0; i < Sigma[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~ Random_v2.cpp:557:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 557 | for (i = 0; i < temp.size(); i++) | ~~^~~~~~~~~~~~~ Random_v2.cpp:558:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 558 | for (j = 0; j < temp[i].size(); j++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:571:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 571 | for (k = 1; k < D.size(); k++) { | ~~^~~~~~~~~~ Random_v2.cpp:585:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 585 | for (i = 0; i < DRR.size(); i++) DRR[i].resize(DRR.size()); | ~~^~~~~~~~~~~~ Random_v2.cpp:586:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 586 | for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size()); | ~~^~~~~~~~~~~~ Random_v2.cpp:587:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 587 | for (i = 0; i < DRS.size(); i++) DRS[i].resize(DSS.size()); | ~~^~~~~~~~~~~~ Random_v2.cpp:588:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 588 | for (i = 0; i < DSR.size(); i++) DSR[i].resize(DRR.size()); | ~~^~~~~~~~~~~~ Random_v2.cpp:590:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 590 | for (i = 0; i < DSS.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:591:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 591 | for (j = 0; j < DSS[i].size(); j++) | ~~^~~~~~~~~~~~~~~ Random_v2.cpp:594:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 594 | for (i = 0; i < DRR.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:595:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 595 | for (j = 0; j < DRR[i].size(); j++) | ~~^~~~~~~~~~~~~~~ Random_v2.cpp:598:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 598 | for (i = 0; i < DSR.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:599:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 599 | for (j = 0; j < DSR[i].size(); j++) { | ~~^~~~~~~~~~~~~~~ Random_v2.cpp:608:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 608 | for (i = 0; i < SigmaSS.size(); i++) { | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:610:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 610 | for (j = 0; j < SigmaSS[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:625:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 625 | for (i = 0; i < DRR.size(); i++) { | ~~^~~~~~~~~~~~ Random_v2.cpp:627:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 627 | for (j = 0; j < DRR[i].size(); j++) | ~~^~~~~~~~~~~~~~~ Random_v2.cpp:675:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 675 | for (i = 0; i < LDSSInverseT.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:677:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 677 | for (j = 0; j < LDSSInverseT[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:693:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 693 | for (i = 0; i < DRR.size(); i++) { | ~~^~~~~~~~~~~~ Random_v2.cpp:695:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 695 | for (j = 0; j < DSS.size(); j++) | ~~^~~~~~~~~~~~ Random_v2.cpp:705:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 705 | for (i = 0; i < mean.size(); i++) | ~~^~~~~~~~~~~~~ Random_v2.cpp:706:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 706 | for (j = 0; j < mean[i].size(); j++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:726:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 726 | for (i = 0; i < SigmaSR.size(); i++) { | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:728:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 728 | for (j = 0; j < SigmaSR[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:740:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 740 | for (i = 0; i < SigmaRGivenS.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:741:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 741 | for (j = 0; j < SigmaRGivenS[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:746:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 746 | for (i = 0; i < SigmaSS.size(); i++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:747:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 747 | for (j = 0; j < SigmaSS[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:749:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 749 | for (i = 0; i < SigmaRR.size(); i++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:750:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 750 | for (j = 0; j < SigmaRR[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:752:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 752 | for (i = 0; i < SigmaSS.size(); i++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:753:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 753 | for (j = 0; j < SigmaRR.size(); j++) { | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:760:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 760 | for (i = 0; i < temp7.size(); i++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp:761:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 761 | for (j = 0; j < temp7[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~ Random_v2.cpp: In member function 'std::vector Random::GaussianGraphicalModel(const std::vector&, const std::vector > >&, const std::vector&, const std::vector >&)': Random_v2.cpp:790:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 790 | for (k = 0; k < UBlocks[k].size(); k++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:807:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 807 | for (i = 0; i < vec.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:812:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 812 | for (i = 0; i < vec.size(); i++) { | ~~^~~~~~~~~~~~ Random_v2.cpp:821:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 821 | for (k = 1; k < Cov.size(); k++) { | ~~^~~~~~~~~~~~ Random_v2.cpp:834:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 834 | for (i = 0; i < CovSS.size(); i++) CovSS[i].resize(CovSS.size()); | ~~^~~~~~~~~~~~~~ Random_v2.cpp:835:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 835 | for (i = 0; i < CovRR.size(); i++) CovRR[i].resize(CovRR.size()); | ~~^~~~~~~~~~~~~~ Random_v2.cpp:836:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 836 | for (i = 0; i < CovSR.size(); i++) CovSR[i].resize(CovRS.size()); | ~~^~~~~~~~~~~~~~ Random_v2.cpp:837:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 837 | for (i = 0; i < CovRS.size(); i++) CovRS[i].resize(CovSR.size()); | ~~^~~~~~~~~~~~~~ Random_v2.cpp:840:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 840 | for (i = 0; i < CovSS.size(); i++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp:841:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 841 | for (j = 0; j < CovSS[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~ Random_v2.cpp:844:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 844 | for (i = 0; i < CovRR.size(); i++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp:845:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 845 | for (j = 0; j < CovRR[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~ Random_v2.cpp:848:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 848 | for (i = 0; i < CovSR.size(); i++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp:849:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 849 | for (j = 0; j < CovSR[i].size(); j++) { | ~~^~~~~~~~~~~~~~~~~ Random_v2.cpp:863:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 863 | for (i = 0; i < CovRGivenS.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:864:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 864 | for (j = 0; j < CovRGivenS[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:877:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 877 | for (i = 0; i < vec.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:884:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 884 | for (i = 0; i < obs.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:889:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 889 | for (i = 0; i < mean.size(); i++) | ~~^~~~~~~~~~~~~ Random_v2.cpp:894:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 894 | for (i = 0; i < z.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:899:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 899 | for (i = 0; i < obs.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:901:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 901 | for (i = 0; i < z.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:913:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 913 | for (i = 0; i < vec.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:918:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 918 | for (i = 0; i < z.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:923:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 923 | for (i = 0; i < z.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:928:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 928 | for (i = 0; i < mean.size(); i++) | ~~^~~~~~~~~~~~~ Random_v2.cpp: In member function 'std::vector > Random::MatrixVariateNormal(const std::vector >&, const std::vector >&, const std::vector > >&, const std::vector&, const std::vector >&)': Random_v2.cpp:948:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 948 | for (k = 0; k < UBlocks.size(); k++) { | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:950:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 950 | for (i = 0; i < UBlocks[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:966:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 966 | for (j = 0; j < U[0].size(); j++) { | ~~^~~~~~~~~~~~~ Random_v2.cpp:968:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 968 | for (i = 0; i < vec.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:973:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 973 | for (i = 0; i < vec.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:976:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 976 | if (j == U[0].size() - 1) first += z.size(); | ~~^~~~~~~~~~~~~~~~~~ Random_v2.cpp:978:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 978 | for (i = 0; i < z.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:994:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 994 | for (k = 1; k < Omega.size(); k++) { | ~~^~~~~~~~~~~~~~ Random_v2.cpp:1007:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1007 | for (i = 0; i < OmegaSS.size(); i++) OmegaSS[i].resize(OmegaSS.size()); | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1008:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1008 | for (i = 0; i < OmegaRR.size(); i++) OmegaRR[i].resize(OmegaRR.size()); | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1009:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1009 | for (i = 0; i < OmegaSR.size(); i++) OmegaSR[i].resize(OmegaRS.size()); | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1010:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1010 | for (i = 0; i < OmegaRS.size(); i++) OmegaRS[i].resize(OmegaSR.size()); | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1012:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1012 | for (i = 0; i < OmegaSS.size(); i++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1013:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1013 | for (j = 0; j < OmegaSS[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1016:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1016 | for (i = 0; i < OmegaRR.size(); i++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1017:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1017 | for (j = 0; j < OmegaRR[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1020:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1020 | for (i = 0; i < OmegaSR.size(); i++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1021:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1021 | for (j = 0; j < OmegaSR[i].size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1035:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1035 | for (i = 0; i < OmegaRGivenS.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1036:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1036 | for (j = 0; j < OmegaRGivenS[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1048:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1048 | for (j = 0; j < U[0].size(); j++) { | ~~^~~~~~~~~~~~~ Random_v2.cpp:1050:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1050 | for (i = 0; i < vec.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:1057:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1057 | for (i = 0; i < obs.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:1062:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1062 | for (i = 0; i < mean.size(); i++) | ~~^~~~~~~~~~~~~ Random_v2.cpp:1067:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1067 | for (i = 0; i < z.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:1070:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1070 | if (j == U[0].size() - 1) first += z.size(); | ~~^~~~~~~~~~~~~~~~~~ Random_v2.cpp:1072:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1072 | for (i = 0; i < obs.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:1074:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1074 | for (i = 0; i < z.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:1086:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1086 | for (j = 0; j < U[k].size(); j++) { | ~~^~~~~~~~~~~~~ Random_v2.cpp:1088:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1088 | for (i = 0; i < vec.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:1093:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1093 | for (i = 0; i < vec.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:1096:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1096 | if (j == U[k].size() - 1) first += z.size(); | ~~^~~~~~~~~~~~~~~~~~ Random_v2.cpp:1098:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1098 | for (i = 0; i < z.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:1133:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1133 | for (i = 0; i < LT.size(); i++) { | ~~^~~~~~~~~~~ Random_v2.cpp:1135:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1135 | for (j = 0; j < LT[i].size(); j++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp:1143:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1143 | for (i = 0; i < U.size(); i++) | ~~^~~~~~~~~~ Random_v2.cpp:1144:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1144 | for (j = 0; j < U[i].size(); j++) | ~~^~~~~~~~~~~~~ Random_v2.cpp: In member function 'double Random::PotentialHyperInverseWishart(double, const std::vector > >&, const std::vector&, const std::vector >&, const std::vector > >&)': Random_v2.cpp:1183:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1183 | for (k = 0; k < D.size(); k++) | ~~^~~~~~~~~~ Random_v2.cpp:1188:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1188 | for (k = 1; k < D.size(); k++) | ~~^~~~~~~~~~ Random_v2.cpp:1196:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1196 | for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size()); | ~~^~~~~~~~~~~~ Random_v2.cpp:1197:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1197 | for (i = 0; i < SigmaSS.size(); i++) SigmaSS[i].resize(SigmaSS.size()); | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1199:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1199 | for (i = 0; i < DSS.size(); i++) | ~~^~~~~~~~~~~~ Random_v2.cpp:1200:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1200 | for (j = 0; j < DSS[i].size(); j++) { | ~~^~~~~~~~~~~~~~~ Random_v2.cpp: In member function 'double Random::PotentialGaussianGraphicalModel(const std::vector&, const std::vector > >&, const std::vector&, const std::vector >&, const std::vector&)': Random_v2.cpp:1225:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1225 | for (i = 0; i < UU.size(); i++) | ~~^~~~~~~~~~~ Random_v2.cpp:1232:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1232 | for (k = 0; k < UBlocks.size(); k++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1236:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1236 | for (i = 0; i < Cov[0].size(); i++) | ~~^~~~~~~~~~~~~~~ Random_v2.cpp:1240:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1240 | for (k = 1; k < Cov.size(); k++) { | ~~^~~~~~~~~~~~ Random_v2.cpp:1241:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1241 | for (i = 0; i < oldComponents[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1244:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1244 | for (i = 0; i < Cov[k].size() - oldComponents[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1251:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1251 | for (k = 0; k < Cov.size(); k++) { | ~~^~~~~~~~~~~~ Random_v2.cpp:1258:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1258 | for (k = 1; k < Cov.size(); k++) { | ~~^~~~~~~~~~~~ Random_v2.cpp:1265:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1265 | for (i = 0; i < CovSub.size(); i++) { | ~~^~~~~~~~~~~~~~~ Random_v2.cpp:1267:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1267 | for (j = 0; j < CovSub[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~ Random_v2.cpp:1271:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1271 | for (i = 0; i < USub.size(); i++) | ~~^~~~~~~~~~~~~ Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector >&, const std::vector >&, const std::vector >&)': Random_v2.cpp:1297:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1297 | for (i = 0; i < XT.size(); i++) { | ~~^~~~~~~~~~~ Random_v2.cpp:1299:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1299 | for (j = 0; j < XT[i].size(); j++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp:1310:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1310 | for (i = 0; i < temp3.size(); i++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector >&, const std::vector >&, const std::vector > >&, const std::vector&, const std::vector >&, const std::vector >&)': Random_v2.cpp:1335:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1335 | for (i = 0; i < UU.size(); i++) | ~~^~~~~~~~~~~ Random_v2.cpp:1336:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1336 | for (j = 0; j < UU[i].size(); j++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp:1343:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1343 | for (k = 0; k < UBlocks.size(); k++) { | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp:1345:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1345 | for (i = 0; i < UBlocks[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1350:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1350 | for (i = 0; i < Omega[0].size(); i++) | ~~^~~~~~~~~~~~~~~~~ Random_v2.cpp:1351:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1351 | for (j = 0; j < UU[first].size(); j++) | ~~^~~~~~~~~~~~~~~~~~ Random_v2.cpp:1355:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1355 | for (k = 1; k < Omega.size(); k++) { | ~~^~~~~~~~~~~~~~ Random_v2.cpp:1356:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1356 | for (i = 0; i < oldComponents[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1357:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1357 | for (j = 0; j < UU[first].size(); j++) | ~~^~~~~~~~~~~~~~~~~~ Random_v2.cpp:1360:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1360 | for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1361:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1361 | for (j = 0; j < UU[first].size(); j++) | ~~^~~~~~~~~~~~~~~~~~ Random_v2.cpp:1380:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1380 | for (k = 0; k < Omega.size(); k++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp:1385:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1385 | for (k = 1; k < Omega.size(); k++) | ~~^~~~~~~~~~~~~~ Random_v2.cpp:1391:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1391 | for (i = 0; i < OmegaSub.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ Random_v2.cpp:1393:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1393 | for (j = 0; j < OmegaSub[i].size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~ Random_v2.cpp:1396:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1396 | for (i = 0; i < USub.size(); i++) { | ~~^~~~~~~~~~~~~ Random_v2.cpp:1398:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1398 | for (j = 0; j < USub[i].size(); j++) | ~~^~~~~~~~~~~~~~~~ Random_v2.cpp: In member function 'std::vector Random::Permutation(int)': Random_v2.cpp:1822:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1822 | for (k = 0; k < perm.size(); k++) | ~~^~~~~~~~~~~~~ Random_v2.cpp: In member function 'double Random::lnGamma(double)': Random_v2.cpp:1847:10: warning: unused variable 'x' [-Wunused-variable] 1847 | double x,y,tt,sum; | ^ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rinterface_v2.cpp -o Rinterface_v2.o In file included from Update_v2.h:8, from Rinterface_v2.cpp:2: Random.h:19: warning: "PI" redefined 19 | #define PI 3.14159265 | In file included from F:/biocbuild/bbs-3.17-bioc/R/include/R.h:72, from Rinterface_v2.cpp:1: F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Constants.h:39: note: this is the location of the previous definition 39 | #define PI M_PI | g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Structure.cpp -o Structure.o In file included from Structure.cpp:29: ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const std::string&, const std::vector&)': ReportPotential.h:32:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 32 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector&)': ReportPotential.h:48:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 48 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)': ReportPotential.h:69:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 69 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ ReportPotential.h:78:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 78 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ In file included from Structure.cpp:30: ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const std::string&, const std::vector&)': ReportAcceptance.h:32:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 32 | for (i = 0; i < update.size(); i++) | ~~^~~~~~~~~~~~~~~ ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector&)': ReportAcceptance.h:48:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 48 | for (i = 0; i < update.size(); i++) | ~~^~~~~~~~~~~~~~~ ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)': ReportAcceptance.h:67:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 67 | for (i = 0; i < update.size(); i++) | ~~^~~~~~~~~~~~~~~ ReportAcceptance.h:76:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 76 | for (i = 0; i < update.size(); i++) | ~~^~~~~~~~~~~~~~~ In file included from ReportProbDelta.h:9, from Structure.cpp:31: PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector&)': PotentialSum.h:30:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 30 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()': PotentialSum.h:41:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 41 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const': PotentialSum.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 61 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const std::string&, Structure*, int)': ReportProbDelta.h:53:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 53 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)': ReportProbDelta.h:85:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 85 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ ReportProbDelta.h: In destructor 'virtual ReportProbDelta::~ReportProbDelta()': ReportProbDelta.h:96:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 96 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ Structure.cpp: In member function 'void Structure::setParameterValues(std::string&)': Structure.cpp:528:8: warning: unused variable 'c' [-Wunused-variable] 528 | char c; | ^ Structure.cpp: In member function 'void Structure::setNumberOfUpdates(std::string&, std::vector&, std::vector&) const': Structure.cpp:1642:15: warning: unused variable 'nRead' [-Wunused-variable] 1642 | int nRead = sscanf(var1,"%d",&value); | ^~~~~ Structure.cpp:1668:19: warning: unused variable 'nRead' [-Wunused-variable] 1668 | int nRead = sscanf(var2,"%le",&value); | ^~~~~ Structure.cpp:1579:12: warning: unused variable 'c' [-Wunused-variable] 1579 | char c; | ^ Structure.cpp: In member function 'ReportDiffexpressed* Structure::setReports(std::string&, int&, std::vector&, std::vector&, std::vector&, int)': Structure.cpp:1728:12: warning: unused variable 'c' [-Wunused-variable] 1728 | char c; | ^ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Update_v2.cpp -o Update_v2.o Update_v2.cpp: In function 'void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector > >&, const std::vector&, const std::vector >&)': Update_v2.cpp:3919:10: warning: unused variable 'pot' [-Wunused-variable] 3919 | double pot = - OmegaGibbs(df,D,oldClique,oldComponents,Q,G,Delta, | ^~~ Update_v2.cpp: In function 'void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector > >&, const std::vector&, const std::vector >&)': Update_v2.cpp:3973:10: warning: unused variable 'pot' [-Wunused-variable] 3973 | double pot = DeltaStarGibbs(oldClique,oldComponents,Q,G,S,newValues, | ^~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Utility_v2.cpp -o Utility_v2.o Utility_v2.cpp: In function 'double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)': Utility_v2.cpp:221:12: warning: unused variable 'detPrior' [-Wunused-variable] 221 | double detPrior = inverse(var,varInv); | ^~~~~~~~ Utility_v2.cpp:228:12: warning: unused variable 'detPosterior' [-Wunused-variable] 228 | double detPosterior = 1.0 /inverse(varInv,var); | ^~~~~~~~~~~~ Utility_v2.cpp: In function 'double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)': Utility_v2.cpp:303:9: warning: unused variable 's' [-Wunused-variable] 303 | int s; | ^ Utility_v2.cpp:328:12: warning: unused variable 'detPrior' [-Wunused-variable] 328 | double detPrior = inverse(var,varInv); | ^~~~~~~~ Utility_v2.cpp:334:12: warning: unused variable 'detPosterior' [-Wunused-variable] 334 | double detPosterior = 1.0 / inverse(varInv,var); | ^~~~~~~~~~~~ Utility_v2.cpp: In function 'void updateMRF1perfect_onedelta(int, std::vector&, std::vector&, const std::vector&, const std::vector&, const std::vector >&, double, double, double, Random&)': Utility_v2.cpp:413:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 413 | for (gg = 0; gg < neighbour[g].size(); gg++) { | ~~~^~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:435:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 435 | for (gg = 0; gg < neighbour[g].size(); gg++) { | ~~~^~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:447:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 447 | for (ggg = 0; ggg < neighbour[gene].size(); ggg++) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp: In function 'double perfectMRF1_onedelta(int*, int, const std::vector >&, const std::vector&, const std::vector&, double, double, double, unsigned int*, int)': Utility_v2.cpp:556:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 556 | if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy); | ~~^~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:600:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 600 | for (gg = 0; gg < neighbour[g].size(); gg++) | ~~~^~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp: In function 'void updateMRF2perfect_onedelta(int, std::vector&, std::vector&, const std::vector&, const std::vector&, const std::vector >&, double, double, Random&)': Utility_v2.cpp:635:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 635 | for (k = 0; k < neighbour[g].size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp: In function 'double perfectMRF2_onedelta(int*, int, const std::vector >&, const std::vector&, const std::vector&, double, double, unsigned int*, int)': Utility_v2.cpp:723:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 723 | if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy); | ~~^~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:760:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 760 | for (k = 0; k < neighbour[g].size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:764:13: warning: unused variable 'ngg' [-Wunused-variable] 764 | int ngg = neighbour[gg].size(); | ^~~ Utility_v2.cpp: In function 'void updateMRF2perfect(int, int, int, int, std::vector&, std::vector&, const std::vector&, const std::vector&, const std::vector >&, double, double, double, Random&)': Utility_v2.cpp:793:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 793 | for (k = 0; k < neighbour[g].size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp: In function 'double perfectMRF2(int*, int, int, const std::vector >&, const std::vector&, const std::vector&, double, double, double, unsigned int*, int)': Utility_v2.cpp:904:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 904 | if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy); | ~~^~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:949:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 949 | for (k = 0; k < neighbour[g].size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:954:15: warning: unused variable 'ngg' [-Wunused-variable] 954 | int ngg = neighbour[gg].size(); | ^~~ Utility_v2.cpp: In function 'double OmegaGibbs(double, const std::vector > >&, const std::vector&, const std::vector >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector > >&, Random&, int)': Utility_v2.cpp:1027:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1027 | for (g1 = 0; g1 < DNew[0].size(); g1++) | ~~~^~~~~~~~~~~~~~~~ Utility_v2.cpp:1028:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1028 | for (g2 = 0; g2 < DNew[0][g1].size(); g2++) | ~~~^~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1036:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1036 | for (k = 1; k < DNew.size(); k++) { | ~~^~~~~~~~~~~~~ Utility_v2.cpp:1041:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1041 | for (g = 0; g < oldComponents[k].size(); g++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1047:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1047 | for (g = 0; g < cliqueSize - oldComponents[k].size(); g++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1059:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1059 | for (g1 = 0; g1 < DNew[k].size(); g1++) | ~~~^~~~~~~~~~~~~~~~ Utility_v2.cpp:1060:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1060 | for (g2 = 0; g2 < DNew[k][g1].size(); g2++) | ~~~^~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp: In function 'double DeltaStarGibbs(const std::vector&, const std::vector >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector > >&, Random&, int)': Utility_v2.cpp:1096:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1096 | for (k = 0; k < OmegaInv.size(); k++) | ~~^~~~~~~~~~~~~~~~~ Utility_v2.cpp:1101:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1101 | for (k = 0; k < OmegaSep.size(); k++) { | ~~^~~~~~~~~~~~~~~~~ Utility_v2.cpp:1104:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1104 | for (i = 0; i < oldComponents[k].size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1107:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1107 | for (j = 0; j < oldComponents[k].size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1115:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1115 | for (k = 0; k < OmegaSep.size(); k++) { | ~~^~~~~~~~~~~~~~~~~ Utility_v2.cpp:1129:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1129 | for (k = 0; k < Omega.size(); k++) { | ~~^~~~~~~~~~~~~~ Utility_v2.cpp:1133:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1133 | for (gg = 0; gg < oldComponents[k].size(); gg++) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1135:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1135 | for (gg = oldComponents[k].size(); gg < Omega[k].size(); gg++) { | ~~~^~~~~~~~~~~~~~~~~ Utility_v2.cpp:1238:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1238 | for (k = 0; k < OmegaInv.size(); k++) { | ~~^~~~~~~~~~~~~~~~~ Utility_v2.cpp:1240:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1240 | for (r = 0; r < nr[k].size(); r++) { | ~~^~~~~~~~~~~~~~ Utility_v2.cpp:1242:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1242 | for (s = 0; s < nr[k].size(); s++) { | ~~^~~~~~~~~~~~~~ Utility_v2.cpp:1258:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1258 | for (k = 0; k < OmegaSepInv.size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1260:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1260 | for (r = 0; r < oldComponents[k].size(); r++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1262:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1262 | for (s = 0; s < oldComponents[k].size(); s++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1409:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1409 | for (index = 0; index < L.size(); index++) | ~~~~~~^~~~~~~~~~ Utility_v2.cpp:1458:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1458 | for (k = 0; k < VinvSparseReversed.size(); k++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1460:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1460 | for (k = 0; k < VinvSparseReversed.size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1463:33: warning: variable 'itextra' set but not used [-Wunused-but-set-variable] 1463 | map::iterator itextra = VinvSparse[k].end(); | ^~~~~~~ Utility_v2.cpp:1501:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1501 | for (index = 0; index < cholReversed.size(); index++) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1563:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1563 | for (k = 0; k < chol.size(); k++) | ~~^~~~~~~~~~~~~ Utility_v2.cpp:1565:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1565 | for (k = 0; k < cholReversed.size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1600:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1600 | for (k = 0; k < cholT.size(); k++) | ~~^~~~~~~~~~~~~~ Utility_v2.cpp:1602:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1602 | for (i = 0; i < chol.size(); i++) { | ~~^~~~~~~~~~~~~ Utility_v2.cpp:1653:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1653 | for (i = 0; i < mean.size(); i++) { | ~~^~~~~~~~~~~~~ Utility_v2.cpp:1693:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1693 | for (k = 0; k < z.size(); k++) | ~~^~~~~~~~~~ Utility_v2.cpp:1713:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1713 | for (i = 0; i < sample.size(); i++) { | ~~^~~~~~~~~~~~~~~ Utility_v2.cpp:1779:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1779 | for (i = 0; i < sample.size(); i++) { | ~~^~~~~~~~~~~~~~~ Utility_v2.cpp: In function 'void inverseTransformOmega(const std::vector > >&, double*)': Utility_v2.cpp:1875:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1875 | for (k = 0; k < OmegaTransformed.size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ Utility_v2.cpp:1877:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 1877 | for (i = 0; i < OmegaTransformed[k].size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c diffExpressed_main.cpp -o diffExpressed_main.o In file included from diffExpressed_main.cpp:16: Random.h:19: warning: "PI" redefined 19 | #define PI 3.14159265 | In file included from F:/biocbuild/bbs-3.17-bioc/R/include/R.h:72, from diffExpressed_main.cpp:4: F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Constants.h:39: note: this is the location of the previous definition 39 | #define PI M_PI | In file included from diffExpressed_main.cpp:22: PotentialX.h: In destructor 'virtual PotentialX::~PotentialX()': PotentialX.h:44:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 44 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const': PotentialX.h:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 64 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ In file included from diffExpressed_main.cpp:31: PotentialSigma2.h: In destructor 'virtual PotentialSigma2::~PotentialSigma2()': PotentialSigma2.h:44:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 44 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const': PotentialSigma2.h:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 64 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ In file included from diffExpressed_main.cpp:32: PotentialPhi.h: In destructor 'virtual PotentialPhi::~PotentialPhi()': PotentialPhi.h:44:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 44 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const': PotentialPhi.h:64:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 64 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ In file included from diffExpressed_main.cpp:33: PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector&)': PotentialSum.h:30:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 30 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ PotentialSum.h: In destructor 'virtual PotentialSum::~PotentialSum()': PotentialSum.h:41:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 41 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const': PotentialSum.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 61 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ In file included from diffExpressed_main.cpp:41: UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)': UpdateDeltaMH.h:47:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 47 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::~UpdateDeltaMH()': UpdateDeltaMH.h:59:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 59 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ In file included from UpdateSigma2MH.h:4, from diffExpressed_main.cpp:43: UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector&, const std::vector&, double)': UpdateMultiplicativePositive.h:50:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 50 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ UpdateMultiplicativePositive.h:53:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 53 | for (i = 0; i < variable.size(); i++) | ~~^~~~~~~~~~~~~~~~~ UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector&, double)': UpdateMultiplicativePositive.h:76:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 76 | for (i = 0; i < variable.size(); i++) | ~~^~~~~~~~~~~~~~~~~ UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector&, const std::vector&, const std::vector&, double)': UpdateMultiplicativePositive.h:124:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 124 | for (i = 0; i < model.size(); i++) | ~~^~~~~~~~~~~~~~ UpdateMultiplicativePositive.h:127:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 127 | for (i = 0; i < variable1.size(); i++) | ~~^~~~~~~~~~~~~~~~~~ UpdateMultiplicativePositive.h:130:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 130 | for (i = 0; i < variable2.size(); i++) | ~~^~~~~~~~~~~~~~~~~~ UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector&, const std::vector&, double)': UpdateMultiplicativePositive.h:159:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 159 | for (i = 0; i < variable1.size(); i++) | ~~^~~~~~~~~~~~~~~~~~ UpdateMultiplicativePositive.h:162:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 162 | for (i = 0; i < variable2.size(); i++) | ~~^~~~~~~~~~~~~~~~~~ UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)': UpdateMultiplicativePositive.h:213:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 213 | for (i = 0; i < variable1.size(); i++) | ~~^~~~~~~~~~~~~~~~~~ UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)': UpdateSigma2MH.h:49:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 49 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::~UpdateSigma2MH()': UpdateSigma2MH.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 61 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)': UpdateSigma2MH.h:71:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 71 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)': UpdateSigma2MH.h:96:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 96 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ In file included from diffExpressed_main.cpp:44: UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)': UpdateTMH.h:48:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 48 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ UpdateTMH.h: In destructor 'virtual UpdateTMH::~UpdateTMH()': UpdateTMH.h:60:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 60 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)': UpdateTMH.h:84:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 84 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ In file included from diffExpressed_main.cpp:45: UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)': UpdateLMH.h:49:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 49 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ UpdateLMH.h: In destructor 'virtual UpdateLMH::~UpdateLMH()': UpdateLMH.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 61 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)': UpdateLMH.h:73:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 73 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)': UpdateLMH.h:99:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 99 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ In file included from diffExpressed_main.cpp:46: UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)': UpdatePhiMH.h:45:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 45 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::~UpdatePhiMH()': UpdatePhiMH.h:57:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 57 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)': UpdatePhiMH.h:69:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 69 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)': UpdatePhiMH.h:96:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 96 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ In file included from diffExpressed_main.cpp:47: UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)': UpdateThetaMH.h:49:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 49 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::~UpdateThetaMH()': UpdateThetaMH.h:61:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 61 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)': UpdateThetaMH.h:85:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 85 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ In file included from diffExpressed_main.cpp:48: UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)': UpdateLambdaMH.h:47:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 47 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::~UpdateLambdaMH()': UpdateLambdaMH.h:59:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 59 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)': UpdateLambdaMH.h:83:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 83 | for (i = 0; i < up.size(); i++) | ~~^~~~~~~~~~~ In file included from diffExpressed_main.cpp:143: PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)': PotentialFunction.h:55:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 55 | for (i = 0; i < term.size(); i++) | ~~^~~~~~~~~~~~~ PotentialFunction.h:55:1: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 55 | for (i = 0; i < term.size(); i++) | ^~~ PotentialFunction.h:62:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 62 | vector update; | ^~~~~~ diffExpressed_main.cpp:202:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 202 | for (k = 0; k < update.size(); k++) | ~~^~~~~~~~~~~~~~~ diffExpressed_main.cpp:217:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 217 | for (k = 0; k < report.size(); k++) | ~~^~~~~~~~~~~~~~~ diffExpressed_main.cpp:224:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 224 | for (i = 0; i < report.size(); i++) | ~~^~~~~~~~~~~~~~~ diffExpressed_main.cpp:227:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 227 | for (i = 0; i < update.size(); i++) | ~~^~~~~~~~~~~~~~~ gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++ -std=gnu++11 -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o registerDynamicSymbol.o -lm -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/XDE.buildbin-libdir/00LOCK-XDE/00new/XDE/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'qqplot' in package 'XDE' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'XDE' as XDE_2.45.0.zip * DONE (XDE)