##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL SpliceWiz
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'SpliceWiz' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAM2blocks.cpp -o BAM2blocks.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FastaReader.cpp -o FastaReader.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FragmentBlocks.cpp -o FragmentBlocks.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GZTools.cpp -o GZTools.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor.cpp -o ReadBlockProcessor.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor_CoverageBlocks.cpp -o ReadBlockProcessor_CoverageBlocks.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor_FragmentsMap.cpp -o ReadBlockProcessor_FragmentsMap.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor_TandemJunctions.cpp -o ReadBlockProcessor_TandemJunctions.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c covTools.cpp -o covTools.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c main.cpp -o main.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c swEngine.cpp -o swEngine.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/ompBAM/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppProgress/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DSPLICEWIZ   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c synthReadGenerator.cpp -o synthReadGenerator.o
g++ -shared -s -static-libgcc -o SpliceWiz.dll tmp.def BAM2blocks.o FastaReader.o FragmentBlocks.o GZTools.o RcppExports.o ReadBlockProcessor.o ReadBlockProcessor_CoverageBlocks.o ReadBlockProcessor_FragmentsMap.o ReadBlockProcessor_TandemJunctions.o covTools.o main.o swEngine.o synthReadGenerator.o -fopenmp -DSPLICEWIZ -LF:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-SpliceWiz/00new/SpliceWiz/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpliceWiz)