##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r PharmacoGx -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PharmacoGx
###
##############################################################################
##############################################################################


* checking for file 'PharmacoGx/DESCRIPTION' ... OK
* preparing 'PharmacoGx':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CreatingPharmacoSet.Rmd' using rmarkdown
--- finished re-building 'CreatingPharmacoSet.Rmd'

--- re-building 'DetectingDrugSynergyAndAntagonism.Rmd' using rmarkdown
Quitting from lines 348-374 (DetectingDrugSynergyAndAntagonism.Rmd) 
Error: processing vignette 'DetectingDrugSynergyAndAntagonism.Rmd' failed with diagnostics:
BiocParallel errors
  2 remote errors, element index: 1, 2
  0 unevaluated and other errors
  first remote error:
Error in logLogisticRegression(treatment1dose, mean_viability, viability_as_pct = FALSE): could not find function "logLogisticRegression"

--- failed re-building 'DetectingDrugSynergyAndAntagonism.Rmd'

--- re-building 'PharmacoGx.Rmd' using rmarkdown
--- finished re-building 'PharmacoGx.Rmd'

SUMMARY: processing the following file failed:
  'DetectingDrugSynergyAndAntagonism.Rmd'

Error: Vignette re-building failed.
Execution halted