| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:42 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ORFhunteR package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1397/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ORFhunteR 1.7.0 (landing page) Vasily V. Grinev
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ||||||||
| Package: ORFhunteR |
| Version: 1.7.0 |
| Command: rm -rf ORFhunteR.buildbin-libdir && mkdir ORFhunteR.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=ORFhunteR.buildbin-libdir ORFhunteR_1.7.0.tar.gz |
| StartedAt: 2022-12-29 05:30:00 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 05:30:59 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 58.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: ORFhunteR_1.7.0.zip |
| PackageFileSize: 1.5 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf ORFhunteR.buildbin-libdir && mkdir ORFhunteR.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=ORFhunteR.buildbin-libdir ORFhunteR_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* installing *source* package 'ORFhunteR' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getBaoMetrics.cpp -o getBaoMetrics.o
getBaoMetrics.cpp: In function 'SEXPREC* getBaoMetrics(SEXP, SEXP, SEXP)':
getBaoMetrics.cpp:158:24: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
158 | delete tmpStrings[0];
| ^
getBaoMetrics.cpp:32:40: note: returned from 'void* operator new [](std::size_t)'
32 | tmpStrings[0] = new char[stringSize];
| ^
getBaoMetrics.cpp:159:24: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
159 | delete tmpStrings[1];
| ^
getBaoMetrics.cpp:33:40: note: returned from 'void* operator new [](std::size_t)'
33 | tmpStrings[1] = new char[stringSize];
| ^
getBaoMetrics.cpp:160:24: warning: 'void operator delete(void*)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
160 | delete tmpStrings[2];
| ^
getBaoMetrics.cpp:34:40: note: returned from 'void* operator new [](std::size_t)'
34 | tmpStrings[2] = new char[stringSize];
| ^
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getCorrelationFactors.cpp -o getCorrelationFactors.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c getPatternCount_V.cpp -o getPatternCount_V.o
g++ -std=gnu++11 -shared -s -static-libgcc -o ORFhunteR.dll tmp.def RcppExports.o getBaoMetrics.o getCorrelationFactors.o getPatternCount_V.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/ORFhunteR.buildbin-libdir/00LOCK-ORFhunteR/00new/ORFhunteR/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ORFhunteR' as ORFhunteR_1.7.0.zip
* DONE (ORFhunteR)