############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MVCClass.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings MVCClass_1.73.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/MVCClass.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'MVCClass/DESCRIPTION' ... OK * this is package 'MVCClass' version '1.73.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MVCClass' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'methods' which was already attached by Depends. Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File 'MVCClass/R/zzz.R': .onLoad calls: require("methods") Package startup functions should not change the search path. See section 'Good practice' in '?.onAttach'. * checking Rd files ... NOTE prepare_Rd: MVC-class.Rd:54-55: Dropping empty section \examples prepare_Rd: dfModel-class.Rd:42-43: Dropping empty section \examples prepare_Rd: gAddChildMessage-class.Rd:42-43: Dropping empty section \examples prepare_Rd: gAddDataMessage-class.Rd:42-43: Dropping empty section \examples prepare_Rd: gAddMessage-class.Rd:37-38: Dropping empty section \examples prepare_Rd: gAddViewMessage-class.Rd:42-43: Dropping empty section \examples prepare_Rd: gAskAncestorMessage-class.Rd:62-63: Dropping empty section \examples prepare_Rd: gEventFun-class.Rd:49-50: Dropping empty section \examples prepare_Rd: gMessage-class.Rd:32-33: Dropping empty section \examples prepare_Rd: gModel-class.Rd:71-72: Dropping empty section \examples prepare_Rd: gModifyMessage-class.Rd:52-53: Dropping empty section \examples prepare_Rd: gSendChildMessage-class.Rd:58-59: Dropping empty section \examples prepare_Rd: gSendParentMessage-class.Rd:49-50: Dropping empty section \examples prepare_Rd: gUpdateDataMessage-class.Rd:51-52: Dropping empty section \examples prepare_Rd: gUpdateMessage-class.Rd:37-38: Dropping empty section \examples prepare_Rd: gUpdateViewMessage-class.Rd:43-44: Dropping empty section \examples prepare_Rd: genView-class.Rd:62-63: Dropping empty section \examples prepare_Rd: linkedModelMVC-class.Rd:59-60: Dropping empty section \examples prepare_Rd: plotView-class.Rd:67-68: Dropping empty section \examples prepare_Rd: qqPlotView-class.Rd:59-60: Dropping empty section \examples prepare_Rd: sPlotView-class.Rd:69-70: Dropping empty section \examples prepare_Rd: singleModelMVC-class.Rd:41-42: Dropping empty section \examples prepare_Rd: spreadView-class.Rd:50-51: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/MVCClass.Rcheck/00check.log' for details.