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### Running command:
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###   rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=MIMOSA.buildbin-libdir MIMOSA_1.37.0.tar.gz
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* installing *source* package 'MIMOSA' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include"   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BetaMix.cpp -o BetaMix.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include"   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c MCMC.cpp -o MCMC.o
MCMC.cpp: In function 'SEXPREC* fitMCMC(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
MCMC.cpp:73:16: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
   73 |         if(file==NULL|fileP==NULL){
      |                ^
MCMC.cpp:88:25: warning: comparison of integer expressions of different signedness: 'std::vector<double>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   88 |         if(alphas.size()!=stim.ncol()){
      |            ~~~~~~~~~~~~~^~~~~~~~~~~~~
MCMC.cpp:189:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  189 |         for(int i=0;i<alphas.size();i++){
      |                     ~^~~~~~~~~~~~~~
MCMC.cpp:192:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  192 |         for(int i=0;i<alphau.size();i++){
      |                     ~^~~~~~~~~~~~~~
MCMC.cpp:524:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  524 |                         for(int j=0;j<p.size();j++){
      |                                     ~^~~~~~~~~
MCMC.cpp:544:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  544 |                         for(int obs=0;obs<alphas.size();obs++){
      |                                       ~~~^~~~~~~~~~~~~~
MCMC.cpp:547:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  547 |                         for(int obs=0;obs<alphau.size();obs++){
      |                                       ~~~^~~~~~~~~~~~~~
MCMC.cpp: In function 'double lkbeta(const std::vector<double>&)':
MCMC.cpp:631:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  631 |         for(int i=0;i<alpha.size();i++){
      |                     ~^~~~~~~~~~~~~
MCMC.cpp: In function 'void simZ(double&, std::vector<double>&, std::vector<double>&, std::vector<double>&, std::vector<double>&, std::vector<bool>&, int, int)':
MCMC.cpp:681:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  681 |         for(i=0;i < lnull.size(); i++){
      |                 ~~^~~~~~~~~~~~~~
MCMC.cpp: In function 'double normconstIBeta(double, double, double, double)':
MCMC.cpp:815:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  815 |         for(int i=0;i<upper.size();i++){
      |                     ~^~~~~~~~~~~~~
MCMC.cpp: In function 'double nc(double, double, double, double, double)':
MCMC.cpp:888:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  888 |         for(int i=0;i<(s.size()-1);i++){
      |                     ~^~~~~~~~~~~~~
MCMC.cpp:893:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  893 |         for(int i=0;i<s.size();i++){
      |                     ~^~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c MIMOSA_init.c -o MIMOSA_init.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c betaintegral.c -o betaintegral.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"  -I"F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include"   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c betaintegralRcpp.cpp -o betaintegralRcpp.o
g++ -std=gnu++11 -shared -s -static-libgcc -o MIMOSA.dll tmp.def BetaMix.o MCMC.o MIMOSA_init.o betaintegral.o betaintegralRcpp.o -lm -lstdc++ -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -IF:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/MIMOSA.buildbin-libdir/00LOCK-MIMOSA/00new/MIMOSA/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MIMOSA' as MIMOSA_1.37.0.zip
* DONE (MIMOSA)