############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=GOSemSim.buildbin-libdir GOSemSim_2.25.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'GOSemSim' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ICmethod.cpp -o ICmethod.o ICmethod.cpp: In function 'Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const std::string&, const std::string&)': ICmethod.cpp:82:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 82 | for (std::size_t i=0; i < ic_.size(); i++ ) { | ~~^~~~~~~~~~~~ ICmethod.cpp:88:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 88 | for (std::size_t i=0; i < ic_.size(); i++ ) { | ~~^~~~~~~~~~~~ ICmethod.cpp:116:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 116 | for (std::size_t i=0; i < anc_.size(); i++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:129:30: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 129 | for ( std::size_t i = 0; i < id1_.size(); i++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:136:34: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 136 | for ( std::size_t j = 0; j < id2_.size(); j++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:163:34: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 163 | for ( std::size_t j = 0; j < id2_.size(); j++ ) { | ~~^~~~~~~~~~~~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -shared -s -static-libgcc -o GOSemSim.dll tmp.def ICmethod.o RcppExports.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/GOSemSim.buildbin-libdir/00LOCK-GOSemSim/00new/GOSemSim/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'GOSemSim' as GOSemSim_2.25.0.zip * DONE (GOSemSim)