############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r EpiMix -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data EpiMix ### ############################################################################## ############################################################################## * checking for file 'EpiMix/DESCRIPTION' ... OK * preparing 'EpiMix': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'Methylation_Modeling.Rmd' using rmarkdown trying URL 'https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/core_K27ac/jointModel/final/E096_18_core_K27ac_hg38lift_mnemonics.bed.gz' Content type 'application/x-gzip' length 3835377 bytes (3.7 MB) ================================================== downloaded 3.7 MB Quitting from lines 314-316 (Methylation_Modeling.Rmd) Error: processing vignette 'Methylation_Modeling.Rmd' failed with diagnostics: Failed to connect to gdac.broadinstitute.org port 80 after 2100 ms: Connection refused --- failed re-building 'Methylation_Modeling.Rmd' SUMMARY: processing the following file failed: 'Methylation_Modeling.Rmd' Error: Vignette re-building failed. Execution halted