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### Running command:
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###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CARNIVAL.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings CARNIVAL_2.9.0.tar.gz
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/CARNIVAL.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'CARNIVAL/DESCRIPTION' ... OK
* this is package 'CARNIVAL' version '2.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CARNIVAL' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
checkSolverPathInSystem: no visible global function definition for
  'searchForSolver'
convergenceTextToTable: no visible binding for global variable '.'
convergenceTextToTable: no visible binding for global variable 'Gap'
convergenceTextToTable: no visible binding for global variable
  'Objective'
convergenceTextToTable: no visible binding for global variable 'Best
  Bound'
convergenceTextToTable: no visible binding for global variable 'index'
createInternalDataRepresentation: no visible global function definition
  for 'buildDataVector'
createInternalDataRepresentation: no visible global function definition
  for 'createVariables'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'nodes'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'nodesValue'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'solution'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Node2Value'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'edgesUpValue'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'edgesDownValue'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'presents'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Node1'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Sign'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Node2'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'Activity'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'nodesType'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'zeroActivity'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'activityUp'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'activityDown'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'UpAct'
exportIlpSolutionFromSolutionMatrix: no visible binding for global
  variable 'DownAct'
getSolutionMatrixGurobi: no visible global function definition for
  'read.csv2'
parseCplexLog: no visible binding for global variable '.'
prepareForCarnivalRun: no visible global function definition for
  'createLpFormulation'
processSolution: no visible global function definition for
  'exportIlpSolutionResultFromXml'
sendTaskToSolver: no visible global function definition for
  'transformVariables'
solveWithCbc: no visible global function definition for 'read.csv2'
solveWithCplex: no visible global function definition for 'read.delim'
timeStringToTable: no visible binding for global variable '.'
timeStringToTable: no visible binding for global variable 'ticks'
timeStringToTable: no visible binding for global variable 'Solutions'
Undefined global functions or variables:
  . Activity Best Bound DownAct Gap Node1 Node2 Node2Value Objective
  Sign Solutions UpAct activityDown activityUp buildDataVector
  createLpFormulation createVariables edgesDownValue edgesUpValue
  exportIlpSolutionResultFromXml index nodes nodesType nodesValue
  presents read.csv2 read.delim searchForSolver solution ticks
  transformVariables zeroActivity
Consider adding
  importFrom("utils", "read.csv2", "read.delim")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/CARNIVAL.Rcheck/00check.log'
for details.