############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS ### ############################################################################## ############################################################################## * checking for file ‘CoGAPS/DESCRIPTION’ ... OK * preparing ‘CoGAPS’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CoGAPS.Rmd’ using rmarkdown Data Model: Dense, Normal Sampler Type: Sequential Loading Data...Done! (00:00:00) -- Equilibration Phase -- 10000 of 50000, Atoms: 74(A), 39(P), ChiSq: 322, Time: 00:00:00 / 00:00:00 20000 of 50000, Atoms: 80(A), 44(P), ChiSq: 188, Time: 00:00:01 / 00:00:05 30000 of 50000, Atoms: 87(A), 41(P), ChiSq: 147, Time: 00:00:01 / 00:00:03 40000 of 50000, Atoms: 78(A), 42(P), ChiSq: 144, Time: 00:00:02 / 00:00:05 50000 of 50000, Atoms: 89(A), 39(P), ChiSq: 105, Time: 00:00:03 / 00:00:06 -- Sampling Phase -- 10000 of 50000, Atoms: 76(A), 39(P), ChiSq: 124, Time: 00:00:04 / 00:00:07 20000 of 50000, Atoms: 74(A), 46(P), ChiSq: 114, Time: 00:00:05 / 00:00:07 30000 of 50000, Atoms: 78(A), 43(P), ChiSq: 137, Time: 00:00:06 / 00:00:07 40000 of 50000, Atoms: 80(A), 44(P), ChiSq: 124, Time: 00:00:06 / 00:00:06 50000 of 50000, Atoms: 80(A), 42(P), ChiSq: 116, Time: 00:00:07 / 00:00:07 trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' Content type 'application/octet-stream' length 433262849 bytes (413.2 MB) ===================================== downloaded 313.8 MB Quitting from lines 235-240 [load single cell data from zenodo] (CoGAPS.Rmd) Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics: download from 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' failed --- failed re-building ‘CoGAPS.Rmd’ SUMMARY: processing the following file failed: ‘CoGAPS.Rmd’ Error: Vignette re-building failed. Execution halted