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### Running command:
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###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:imcdatasets.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings imcdatasets_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/imcdatasets.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘imcdatasets/DESCRIPTION’ ... OK
* this is package ‘imcdatasets’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘imcdatasets’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... WARNING
Found the following significant warnings:

  Warning: 'DamondPancreas2019Data' is deprecated.
  Warning: 'DamondPancreas2019Data' is deprecated.
  Warning: 'DamondPancreas2019Data' is deprecated.
  Warning: 'JacksonFischer2020Data' is deprecated.
  Warning: 'JacksonFischer2020Data' is deprecated.
  Warning: 'JacksonFischer2020Data' is deprecated.
  Warning: 'ZanotelliSpheroids2020Data' is deprecated.
  Warning: 'ZanotelliSpheroids2020Data' is deprecated.
  Warning: 'ZanotelliSpheroids2020Data' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU (user + system) or elapsed time > 5s
                                   user system elapsed
ZanotelliSpheroids2020Data       34.726  0.913  36.751
Zanotelli_2020_Spheroids         34.090  0.964  36.150
JacksonFischer2020Data           20.714  0.944  22.913
DamondPancreas2019Data           19.859  1.180  22.254
JacksonFischer_2020_BreastCancer 18.715  0.611  20.354
Damond_2019_Pancreas             16.669  0.692  20.414
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘Guidelines_Contribution_Dataset-formatting.Rmd’ using ‘UTF-8’... OK
  ‘imcdatasets.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/imcdatasets.Rcheck/00check.log’
for details.