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### Running command:
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### rm -rf rama.buildbin-libdir && mkdir rama.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=rama.buildbin-libdir rama_1.72.0.tar.gz
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* installing *source* package 'rama' ...
** using staged installation
** libs
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function 'mcmc_shift':
estimation_slice.c:122:10: warning: unused variable 'SSeps_sd_new' [-Wunused-variable]
122 | double SSeps_sd_new=0.;
| ^~~~~~~~~~~~
estimation_slice.c:121:10: warning: unused variable 'SSeps_sd' [-Wunused-variable]
121 | double SSeps_sd=0.;
| ^~~~~~~~
estimation_slice.c:117:10: warning: unused variable 'pi' [-Wunused-variable]
117 | double pi=3.14;
| ^~
estimation_slice.c:116:24: warning: unused variable 'SS12' [-Wunused-variable]
116 | double SSR1=0,SSR2=0,SS12=0;
| ^~~~
estimation_slice.c:116:17: warning: unused variable 'SSR2' [-Wunused-variable]
116 | double SSR1=0,SSR2=0,SS12=0;
| ^~~~
estimation_slice.c:116:10: warning: unused variable 'SSR1' [-Wunused-variable]
116 | double SSR1=0,SSR2=0,SS12=0;
| ^~~~
estimation_slice.c:115:25: warning: unused variable 'dens_epsilon_new' [-Wunused-variable]
115 | double dens_epsilon=0,dens_epsilon_new=0;
| ^~~~~~~~~~~~~~~~
estimation_slice.c:115:10: warning: unused variable 'dens_epsilon' [-Wunused-variable]
115 | double dens_epsilon=0,dens_epsilon_new=0;
| ^~~~~~~~~~~~
estimation_slice.c:114:22: warning: unused variable 'l_epsilon_new' [-Wunused-variable]
114 | double l_epsilon=0,l_epsilon_new=0;
| ^~~~~~~~~~~~~
estimation_slice.c:114:10: warning: unused variable 'l_epsilon' [-Wunused-variable]
114 | double l_epsilon=0,l_epsilon_new=0;
| ^~~~~~~~~
estimation_slice.c:113:27: warning: unused variable 'lambda_eps2_new' [-Wunused-variable]
113 | double lambda_eps1_new, lambda_eps2_new;
| ^~~~~~~~~~~~~~~
estimation_slice.c:113:10: warning: unused variable 'lambda_eps1_new' [-Wunused-variable]
113 | double lambda_eps1_new, lambda_eps2_new;
| ^~~~~~~~~~~~~~~
estimation_slice.c: In function 'slice_sampling_lambda_eps':
estimation_slice.c:484:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
484 | while(J>0 & z<log_f_L)
| ~^~
estimation_slice.c:493:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
493 | while(K>0 & z<log_f_R)
| ~^~
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function 'mcmc':
ex_estimation_slice.c:144:10: warning: unused variable 'old_a' [-Wunused-variable]
144 | double old_a=0,width_a=1.;
| ^~~~~
ex_estimation_slice.c:143:10: warning: unused variable 'old_b' [-Wunused-variable]
143 | double old_b=0,width_b=5.;
| ^~~~~
ex_estimation_slice.c:138:10: warning: unused variable 'sum_res2' [-Wunused-variable]
138 | double sum_res2;
| ^~~~~~~~
ex_estimation_slice.c:137:10: warning: unused variable 'sum_res1' [-Wunused-variable]
137 | double sum_res1;
| ^~~~~~~~
ex_estimation_slice.c:119:19: warning: unused variable 'dens_t_new' [-Wunused-variable]
119 | double dens_t=0,dens_t_new=0;
| ^~~~~~~~~~
ex_estimation_slice.c:119:10: warning: unused variable 'dens_t' [-Wunused-variable]
119 | double dens_t=0,dens_t_new=0;
| ^~~~~~
ex_estimation_slice.c:112:10: warning: unused variable 'pi' [-Wunused-variable]
112 | double pi=3.14;
| ^~
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mean.sd.c -o mean.sd.o
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c reorder.c -o reorder.o
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c util.c -o util.o
util.c: In function 'product_mat_vec':
util.c:574:11: warning: unused variable 'k' [-Wunused-variable]
574 | int i,j,k;
| ^
util.c: In function 'slice_sampling_a':
util.c:629:17: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
629 | while(K>0 & (z<log_f_L | z<log_f_R))
| ~^~~~~~~~
util.c:629:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
629 | while(K>0 & (z<log_f_L | z<log_f_R))
| ~^~
util.c:636:8: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
636 | if(z>log_f_L & mL<L)
| ~^~~~~~~~
util.c:643:8: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
643 | if(z>log_f_R & mR>R)
| ~^~~~~~~~
util.c:613:13: warning: unused variable 'v' [-Wunused-variable]
613 | double u, v, L, R, z, a1;
| ^
util.c: In function 'slice_sampling_b':
util.c:703:17: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
703 | while(K>0 & (z<log_f_L | z<log_f_R))
| ~^~~~~~~~
util.c:703:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
703 | while(K>0 & (z<log_f_L | z<log_f_R))
| ~^~
util.c:710:8: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
710 | if(z>log_f_L & mL<L)
| ~^~~~~~~~
util.c:717:8: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
717 | if(z>log_f_R & mR>R)
| ~^~~~~~~~
util.c:686:13: warning: unused variable 'v' [-Wunused-variable]
686 | double u, v, L, R, z, b1;
| ^
util.c: In function 'slice_sampling_b2':
util.c:767:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
767 | while(J>0 & z<log_f_L)
| ~^~
util.c:775:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
775 | while(K>0 & z<log_f_R)
| ~^~
util.c: In function 'slice_sampling_a2':
util.c:822:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
822 | while(J>0 & z<log_f_L)
| ~^~
util.c:830:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
830 | while(K>0 & z<log_f_R)
| ~^~
util.c: In function 'slice_sampling_rho':
util.c:876:17: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
876 | while(K>0 & (z<log_f_L | z<log_f_R))
| ~^~~~~~~~
util.c:876:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
876 | while(K>0 & (z<log_f_L | z<log_f_R))
| ~^~
util.c:883:8: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
883 | if(z>log_f_L & mL<L)
| ~^~~~~~~~
util.c:890:8: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
890 | if(z>log_f_R & mR>R)
| ~^~~~~~~~
util.c:860:13: warning: unused variable 'v' [-Wunused-variable]
860 | double u, v, L, R, z, rho_new;
| ^
util.c: In function 'slice_sampling_rho2':
util.c:935:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
935 | while(J>0 & z<log_f_L)
| ~^~
util.c:944:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
944 | while(K>0 & z<log_f_R)
| ~^~
util.c: In function 'slice_sampling_shift':
util.c:1019:17: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
1019 | while(K>0 & (z<log_f_L | z<log_f_R))
| ~^~~~~~~~
util.c:1019:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1019 | while(K>0 & (z<log_f_L | z<log_f_R))
| ~^~
util.c:1026:8: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1026 | if(z>log_f_L & mL<L)
| ~^~~~~~~~
util.c:1033:8: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1033 | if(z>log_f_R & mR>R)
| ~^~~~~~~~
util.c:1000:13: warning: unused variable 'v' [-Wunused-variable]
1000 | double u, v, L, R, z, shift_new;
| ^
util.c: In function 'slice_sampling_shift2':
util.c:1100:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1100 | while(J>0 & z<log_f_L)
| ~^~
util.c:1108:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1108 | while(K>0 & z<log_f_R)
| ~^~
util.c:1082:13: warning: unused variable 'v' [-Wunused-variable]
1082 | double u, v, L, R, z, shift_new;
| ^
util.c: In function 'slice_sampling_p':
util.c:1248:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1248 | while(J>0 & z<log_f_L)
| ~^~
util.c:1256:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
1256 | while(K>0 & z<log_f_R)
| ~^~
gcc -shared -s -static-libgcc -o rama.dll tmp.def estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/rama.buildbin-libdir/00LOCK-rama/00new/rama/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'rama' is deprecated and will be removed from Bioconductor
version 3.17
** testing if installed package can be loaded from final location
Warning: Package 'rama' is deprecated and will be removed from Bioconductor
version 3.17
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rama' as rama_1.72.0.zip
* DONE (rama)