############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf destiny.buildbin-libdir && mkdir destiny.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=destiny.buildbin-libdir destiny_3.12.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'destiny' ... ** using staged installation ** libs g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/grDevices/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -ggdb -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:397, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 718 | struct palign_impl | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 741 | struct palign_impl | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 764 | struct palign_impl | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:377, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:370, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:439, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:370, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:439, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Sparse:26, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:370, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:439, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from 'struct Eigen::internal::evaluator >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Derived&) [with Derived = Eigen::SparseMatrix]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' RcppExports.cpp:27:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:155:39: required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]' F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]' F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:27:128: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:125:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:155:39: required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]' F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]' F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:27:128: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/grDevices/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -ggdb -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c censoring.cpp -o censoring.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:397, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 718 | struct palign_impl | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 741 | struct palign_impl | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 764 | struct palign_impl | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:377, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:370, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:439, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:370, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:439, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Sparse:26, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:370, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Core:439, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/Dense:1, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/RcppEigen.h:25, from censoring.cpp:7: F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from 'Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' censoring.cpp:116:46: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long long int]': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from 'Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long long int]' censoring.cpp:116:46: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from 'struct Eigen::internal::evaluator >' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = Eigen::internal::assign_op]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Derived&) [with Derived = Eigen::SparseMatrix]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:774:26: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]' censoring.cpp:105:17: required from here F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppEigen/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/grDevices/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -ggdb -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o utils.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/meat/destiny.buildbin-libdir/00LOCK-destiny/00new/destiny/libs/x64 ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'destiny' as destiny_3.12.0.zip * DONE (destiny)