##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL synapsis
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'synapsis' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'synapsis'
    finding HTML links ... done
    annotate_foci_counting                  html  
    annotate_foci_counting_adjusted         html  
    append_data_frame                       html  
    auto_crop_fast                          html  
    count_foci                              html  
    crop_single_object_fast                 html  
    get_C1                                  html  
    get_blobs                               html  
    get_coincident_foci                     html  
    get_foci_per_cell                       html  
    get_overlap_mask                        html  
    get_pachytene                           html  
    keep_cells                              html  
    make_foci_mask                          html  
    make_strand_mask                        html  
    remove_XY                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (synapsis)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'miRcomp' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SPEM' is missing or broken
 done