############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf synapsis.buildbin-libdir && mkdir synapsis.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=synapsis.buildbin-libdir synapsis_1.1.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'synapsis' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'synapsis' finding HTML links ... done annotate_foci_counting html annotate_foci_counting_adjusted html append_data_frame html auto_crop_fast html count_foci html crop_single_object_fast html get_C1 html get_blobs html get_coincident_foci html get_foci_per_cell html get_overlap_mask html get_pachytene html keep_cells html make_foci_mask html make_strand_mask html remove_XY html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'synapsis' as synapsis_1.1.0.zip * DONE (synapsis)