############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5client.buildbin-libdir rhdf5client_1.17.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'rhdf5client' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c extract.c -o extract.o extract.c: In function 'extractBin': extract.c:101:42: warning: 'rdp' may be used uninitialized in this function [-Wmaybe-uninitialized] A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]); ^ extract.c:101:52: warning: 'rip' may be used uninitialized in this function [-Wmaybe-uninitialized] A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]); ^ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/rhdf5client.buildbin-libdir/00LOCK-rhdf5client/00new/rhdf5client/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rhdf5client' finding HTML links ... done H5S_Array-class html H5S_Array html H5S_ArraySeed-class html H5S_Matrix-class html H5S_dataset html H5S_dataset2 html H5S_source-class html HSDSArray html HSDSArraySeed html HSDSDataset-class html HSDSDataset html HSDSFile-class html HSDSFile html HSDSMatrix html HSDSSource-class html HSDSSource html HSDS_Matrix html HSDS_Matrix_OLD html URL_h5serv html URL_hsds html as html check_hsds html dataset html dim-H5S_ArraySeed-method html dim html dimnames-H5S_ArraySeed-method html dimnames html domains html dsmeta html extract_array html fetchDatasets html getData-methods html getDatasetAttrs html getDatasetSlice html getDatasetUUIDs html getDims html getHRDF html getReq html groups-methods html hsdsInfo html internalDim html links html listDatasets html listDomains-methods html rhdf5client-deprecated html rhdf5client html setPath html sproc html sub-H5S_dataset-character-character-ANY-method html sub-H5S_dataset-numeric-numeric-ANY-method html sub-HSDSDataset-numeric-ANY-ANY-method html sub-HSDSDataset-numeric-numeric-ANY-method html sub-sub html targets html transfermode html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'rhdf5client' as rhdf5client_1.17.0.zip * DONE (rhdf5client)