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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cellxgenedp.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cellxgenedp_1.0.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/cellxgenedp.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellxgenedp/DESCRIPTION’ ... OK
* this is package ‘cellxgenedp’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cellxgenedp’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.cxg_sce_validate_software_requirements: no visible global function
  definition for ‘installed.packages’
Undefined global functions or variables:
  installed.packages
Consider adding
  importFrom("utils", "installed.packages")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘cellxgenedp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: FACETS
> ### Title: Facets available for querying cellxgene data
> ### Aliases: FACETS facets facets_filter
> ### Keywords: datasets
> 
> ### ** Examples
> 
> f <- facets()
Error in `group_by()`:
! Must group by variables found in `.data`.
Column `label` is not found.
Column `ontology_term_id` is not found.
Backtrace:
     ▆
  1. └─cellxgenedp::facets()
  2.   └─base::lapply(facets, .facet, cellxgene_db = cellxgene_db)
  3.     └─cellxgenedp (local) FUN(X[[i]], ...)
  4.       ├─dplyr::bind_cols(...)
  5.       │ └─rlang::list2(...)
  6.       ├─dplyr::ungroup(...)
  7.       ├─dplyr::count(...)
  8.       ├─dplyr::group_by(bind_rows(projection), .data$label, .data$ontology_term_id)
  9.       └─dplyr:::group_by.data.frame(bind_rows(projection), .data$label, .data$ontology_term_id)
 10.         └─dplyr::group_by_prepare(.data, ..., .add = .add, caller_env = caller_env())
 11.           └─rlang::abort(bullets, call = error_call)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
    1. └─cellxgenedp::facets() at test-facets.R:5:4
    2.   └─base::lapply(facets, .facet, cellxgene_db = cellxgene_db)
    3.     └─cellxgenedp (local) FUN(X[[i]], ...)
    4.       ├─dplyr::bind_cols(...)
    5.       │ └─rlang::list2(...)
    6.       ├─dplyr::ungroup(...)
    7.       ├─dplyr::count(...)
    8.       ├─dplyr::group_by(bind_rows(projection), .data$label, .data$ontology_term_id)
    9.       └─dplyr:::group_by.data.frame(bind_rows(projection), .data$label, .data$ontology_term_id)
   10.         └─dplyr::group_by_prepare(.data, ..., .add = .add, caller_env = caller_env())
   11.           └─rlang::abort(bullets, call = error_call)
  
  [ FAIL 3 | WARN 0 | SKIP 3 | PASS 36 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.15-bioc/meat/cellxgenedp.Rcheck/00check.log’
for details.