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###
### Running command:
###
###   rm -rf PathoStat.buildbin-libdir && mkdir PathoStat.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=PathoStat.buildbin-libdir PathoStat_1.21.0.tar.gz
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* installing *source* package 'PathoStat' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PathoStat'
    finding HTML links ... done
    Bootstrap_LOOCV_LR_AUC                  html  
    Chisq_Test_Pam                          html  
    Fisher_Test_Pam                         html  
    GET_PAM                                 html  
    LOOAUC_simple_multiple_noplot_one_df    html  
    LOOAUC_simple_multiple_one_df           html  
    PathoStat-class                         html  
    TranslateIdToTaxLevel                   html  
    Wilcox_Test_df                          html  
    findRAfromCount                         html  
    findTaxonMat                            html  
    findTaxonomy                            html  
    findTaxonomy300                         html  
    formatTaxTable                          html  
    getShinyInput                           html  
    getShinyInputCombat                     html  
    getShinyInputOrig                       html  
    getSignatureFromMultipleGlmnet          html  
    grepTid                                 html  
    loadPathoscopeReports                   html  
    loadPstat                               html  
    log2CPM                                 html  
    percent                                 html  
    phyloseq_to_edgeR                       html  
    plotPCAPlotly                           html  
    plotPCoAPlotly                          html  
    pstat_data                              html  
    readPathoscopeData                      html  
    runPathoStat                            html  
    savePstat                               html  
    setShinyInput                           html  
    setShinyInputCombat                     html  
    setShinyInputOrig                       html  
    summarizeTable                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'PathoStat' as PathoStat_1.21.0.zip
* DONE (PathoStat)