############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MQmetrics.buildbin-libdir && mkdir MQmetrics.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=MQmetrics.buildbin-libdir MQmetrics_1.3.3.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'MQmetrics' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MQmetrics' finding HTML links ... done MaxQuantAnalysisInfo html PlotAcquisitionCycle html PlotAllDynamicRange html PlotAndromedaScore html PlotCharge html PlotCombinedDynamicRange html PlotHydrophobicity html PlotIntensity html PlotIsotopePattern html PlotMsMs html PlotPCA html PlotPTM html PlotPTMAcrossSamples html PlotPeaks html PlotPeptidesIdentified html PlotProteaseSpecificity html PlotProteinCoverage html PlotProteinOverlap html PlotProteinPeptideRatio html PlotProteinsIdentified html PlotTotalIonCurrent html PlotiRT html PlotiRTScore html ReportTables html generateReport html make_MQCombined html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'MQmetrics' as MQmetrics_1.3.3.zip * DONE (MQmetrics)