##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r MEIGOR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MEIGOR
###
##############################################################################
##############################################################################


* checking for file 'MEIGOR/DESCRIPTION' ... OK
* preparing 'MEIGOR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MEIGOR-vignette.Rnw' using knitr
Loading required package: Rsolnp
Loading required package: snowfall
Loading required package: snow
Loading required package: CNORode
Loading required package: CellNOptR
Loading required package: RBGL
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated,
    append, as.data.frame, basename, cbind, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Loading required package: hash
hash-2.2.6.1 provided by Decision Patterns

Loading required package: RCurl
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: XML

Attaching package: 'XML'

The following object is masked from 'package:graph':

    addNode

Loading required package: ggplot2
Loading required package: genalg

Attaching package: 'CNORode'

The following object is masked from 'package:stats':

    simulate

Loading required package: deSolve
fitting parameter 'x' without any variables
Warning in nls(~nls_fobj(x), start = list(x = x0), trace = disp_iter, algorithm = "port",  :
  Convergence failure: false convergence (8)
fitting parameter 'x' without any variables
Warning in nls(~nls_fobj(x), start = list(x = x0), trace = disp_iter, algorithm = "port",  :
  Convergence failure: false convergence (8)
Warning in searchCommandline(parallel, cpus = cpus, type = type, socketHosts = socketHosts,  :
  Unknown option on commandline: tools::buildVignettes(dir 
snowfall 1.84-6.1 initialized (using snow 0.4-4): parallel execution on 3 CPUs.

Explicit sfStop() is missing: stop now.

Stopping cluster

Warning in searchCommandline(parallel, cpus = cpus, type = type, socketHosts = socketHosts,  :
  Unknown option on commandline: tools::buildVignettes(dir 
snowfall 1.84-6.1 initialized (using snow 0.4-4): parallel execution on 4 CPUs.


Stopping cluster

Quitting from lines 1167-1173 (MEIGOR-vignette.Rnw) 
Error: processing vignette 'MEIGOR-vignette.Rnw' failed with diagnostics:
$ operator not defined for this S4 class
--- failed re-building 'MEIGOR-vignette.Rnw'

SUMMARY: processing the following file failed:
  'MEIGOR-vignette.Rnw'

Error: Vignette re-building failed.
Execution halted