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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EWCE.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings EWCE_1.3.3.tar.gz
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/EWCE.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EWCE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EWCE' version '1.3.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EWCE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                            user system elapsed
merged_ewce                                20.76   1.32   22.66
controlled_geneset_enrichment              13.87   1.65   16.56
generate_bootstrap_plots_for_transcriptome 14.46   0.83   15.78
filter_nonorthologs                        14.03   0.57   14.98
filter_genes_without_1to1_homolog          13.51   0.79   14.61
generate_bootstrap_plots                   11.13   1.03   12.49
merge_ctd                                  10.79   0.91   11.85
sct_normalize                              10.84   0.63   11.64
bootstrap_enrichment_test                  10.58   0.65   11.56
ewce_expression_data                        9.97   0.82   11.15
check_ewce_genelist_inputs                  9.83   0.77   11.16
add_res_to_merging_list                     7.18   1.53    9.94
standardise_ctd                             6.10   0.37    6.77
fix_bad_mgi_symbols                         4.76   0.75    6.05
merge_sce                                   4.98   0.28    5.57
bin_specificity_into_quantiles              4.59   0.33    5.11
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK