##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CMA
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'CMA' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CMA'
    finding HTML links ... done
    CMA-package                             html  
    ElasticNetCMA-methods                   html  
    ElasticNetCMA                           html  
    GeneSelection-methods                   html  
    GeneSelection                           html  
    GenerateLearningsets                    html  
    LassoCMA-methods                        html  
    LassoCMA                                html  
    Planarplot-methods                      html  
    Planarplot                              html  
    best                                    html  
    boxplot                                 html  
    classification-methods                  html  
    classification                          html  
    cloutput-class                          html  
    clvarseloutput-class                    html  
    compBoostCMA-methods                    html  
    compBoostCMA                            html  
    compare-methods                         html  
    compare                                 html  
    dldaCMA-methods                         html  
    dldaCMA                                 html  
    evaloutput-class                        html  
    evaluation-methods                      html  
    evaluation                              html  
    fdaCMA-methods                          html  
    fdaCMA                                  html  
    filter                                  html  
    flexdaCMA-methods                       html  
    flexdaCMA                               html  
    ftable                                  html  
    gbmCMA-methods                          html  
    gbmCMA                                  html  
    genesel-class                           html  
    golub                                   html  
    internals                               html  
    join-methods                            html  
    join                                    html  
    khan                                    html  
    knnCMA-methods                          html  
    knnCMA                                  html  
    ldaCMA-methods                          html  
    ldaCMA                                  html  
    learningsets-class                      html  
    nnetCMA-methods                         html  
    nnetCMA                                 html  
    obsinfo                                 html  
    pknnCMA-methods                         html  
    pknnCMA                                 html  
    plot,cloutput-method                    html  
    plot,genesel-method                     html  
    plot,tuningresult-method                html  
    plrCMA-methods                          html  
    plrCMA                                  html  
    pls_ldaCMA-methods                      html  
    pls_ldaCMA                              html  
    pls_lrCMA-methods                       html  
    pls_lrCMA                               html  
    pls_rfCMA-methods                       html  
    pls_rfCMA                               html  
    pnnCMA-methods                          html  
    pnnCMA                                  html  
    prediction-methods                      html  
    prediction                              html  
    predoutput-class                        html  
    qdaCMA-methods                          html  
    qdaCMA                                  html  
    rfCMA-methods                           html  
    rfCMA                                   html  
    roc                                     html  
    scdaCMA-methods                         html  
    scdaCMA                                 html  
    shrinkldaCMA-methods                    html  
    shrinkldaCMA                            html  
    summary                                 html  
    svmCMA-methods                          html  
    svmCMA                                  html  
    toplist                                 html  
    tune-methods                            html  
    tune                                    html  
    tuningresult-class                      html  
    varseloutput-class                      html  
    weighted_mcr-methods                    html  
    weighted_mcr                            html  
    wmc-methods                             html  
    wmc                                     html  
    wmcr_result-class                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CMA)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'RBGL' is missing or broken
 done