############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/workflows/src/contrib/ExpHunterSuite_1.2.0.tar.gz && rm -rf ExpHunterSuite.buildbin-libdir && mkdir ExpHunterSuite.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpHunterSuite.buildbin-libdir ExpHunterSuite_1.2.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ExpHunterSuite_1.2.0.zip && rm ExpHunterSuite_1.2.0.tar.gz ExpHunterSuite_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 39 734k 39 287k 0 0 428k 0 0:00:01 --:--:-- 0:00:01 428k 100 734k 100 734k 0 0 618k 0 0:00:01 0:00:01 --:--:-- 618k install for i386 * installing *source* package 'ExpHunterSuite' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ExpHunterSuite' finding HTML links ... done STC html acc html catched_pairwise_termsim html check_results html check_results_list html degh_output html degsynth html enrich_GSEA html enrich_all_customs html enrich_clusters_with_gmt html enrichment_ORA html enrichment_clusters_ORA html exists_enrich_df html exists_graph_file html extract_from_cm html fcfunc html fmeasure html functional_hunter html get_organismID_byOnto html get_organism_table html get_stats html get_stats_from_cm html get_unexported_function html graph_file_name html ht2logFCPlot html id_translation_orgdb html install_DEgenes_hunter html load_WGCNA_results html load_and_parse_gmt html load_hunter_folder html load_package_result html load_synth_dataset html main_degenes_Hunter html multienricher html obtain_info_from_biomaRt html parallel_list html perform_GSEA_clusters html perform_topGO html perform_topGO_local html ppv html prepare_for_fortify html recall html rtable2measures html scale_data_matrix html scale_range html spc html target html target_generation html toc html translate_id html write_df_list_as_tables html write_enrich_files html write_expression_report html write_functional_report html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ExpHunterSuite' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ExpHunterSuite' as ExpHunterSuite_1.2.0.zip * DONE (ExpHunterSuite) * installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library' package 'ExpHunterSuite' successfully unpacked and MD5 sums checked