############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ISAnalytics_1.2.1.tar.gz && rm -rf ISAnalytics.buildbin-libdir && mkdir ISAnalytics.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ISAnalytics.buildbin-libdir ISAnalytics_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ISAnalytics_1.2.1.zip && rm ISAnalytics_1.2.1.tar.gz ISAnalytics_1.2.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 83 1906k 83 1592k 0 0 1903k 0 0:00:01 --:--:-- 0:00:01 1902k 100 1906k 100 1906k 0 0 2074k 0 --:--:-- --:--:-- --:--:-- 2074k install for i386 * installing *source* package 'ISAnalytics' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ISAnalytics' finding HTML links ... done CIS_grubbs html CIS_volcano_plot html HSC_population_plot html HSC_population_size_estimate html ISAnalytics html aggregate_metadata html aggregate_values_by_key html annotation_IS_vars html as_sparse_matrix html association_file_columns html available_outlier_tests html blood_lineages_default html clinical_relevant_suspicious_genes html comparison_matrix html compute_abundance html compute_near_integrations html cumulative_count_union html date_columns_coll html date_formats html default_iss_file_prefixes html default_meta_agg html default_stats html generate_Vispa2_launch_AF html generate_blank_association_file html import_Vispa2_stats html import_association_file html import_parallel_Vispa2Matrices_auto html import_parallel_Vispa2Matrices_interactive html import_single_Vispa2Matrix html known_clinical_oncogenes html mandatory_IS_vars html matching_options html outlier_filter html outliers_by_pool_fragments html quantification_types html realign_after_collisions html reduced_AF_columns html remove_collisions html sample_statistics html separate_quant_matrices html threshold_filter html top_integrations html unzip_file_system html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ISAnalytics' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ISAnalytics' as ISAnalytics_1.2.1.zip * DONE (ISAnalytics) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'ISAnalytics' successfully unpacked and MD5 sums checked