BioC 3.0: CHECK report for KEGGprofile on moscato1

Package: KEGGprofile

Version: 1.8.2

Command: rm -rf KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && mkdir KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGprofile.buildbin-libdir KEGGprofile_1.8.2.tar.gz >KEGGprofile.Rcheck\00install.out 2>&1 && cp KEGGprofile.Rcheck\00install.out KEGGprofile-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=KEGGprofile.buildbin-libdir --install="check:KEGGprofile-install.out" --force-multiarch --no-vignettes --timings KEGGprofile_1.8.2.tar.gz

StartedAt: 2015-04-10 02:32:22 -0700 (Fri, 10 Apr 2015)

EndedAt: 2015-04-10 02:36:49 -0700 (Fri, 10 Apr 2015)

EllapsedTime: 267.6 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGprofile.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && mkdir KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGprofile.buildbin-libdir KEGGprofile_1.8.2.tar.gz >KEGGprofile.Rcheck\00install.out 2>&1 && cp KEGGprofile.Rcheck\00install.out KEGGprofile-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=KEGGprofile.buildbin-libdir --install="check:KEGGprofile-install.out" --force-multiarch --no-vignettes --timings KEGGprofile_1.8.2.tar.gz
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* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/KEGGprofile.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGprofile/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGprofile' version '1.8.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGprofile' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [42s] OK
Examples with CPU or elapsed time > 5s
              user system elapsed
plot_pathway 12.59    0.6   17.05
** running examples for arch 'x64' ... [33s] OK
Examples with CPU or elapsed time > 5s
              user system elapsed
plot_pathway 11.08   0.49   11.58
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

install for i386

* installing *source* package 'KEGGprofile' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'KEGGprofile' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGprofile' as KEGGprofile_1.8.2.zip
* DONE (KEGGprofile)

name	user	system	elapsed
col_by_value	0.05	0.00	0.05
convertId	0.58	0.07	2.95
download_KEGGfile	0.01	0.00	2.02
download_latest_pathway	0	0	0
find_enriched_pathway	4.28	0.11	4.39
newIdMatrix	0	0	0
parse_XMLfile	0.09	0.00	0.09
plot_pathway	12.59	0.60	17.05
plot_pathway_cor	4.82	0.05	4.87
plot_profile	1.89	0.16	2.05

name	user	system	elapsed
col_by_value	0.03	0.00	0.03
convertId	0.47	0.04	2.81
download_KEGGfile	0.03	0.00	1.90
download_latest_pathway	0	0	0
find_enriched_pathway	3.40	0.00	3.41
newIdMatrix	0	0	0
parse_XMLfile	0.11	0.00	0.10
plot_pathway	11.08	0.49	11.58
plot_pathway_cor	3.84	0.02	3.85
plot_profile	1.92	0.14	2.06