aroma.light 1.10.0
Henrik Bengtsson
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/aroma.light | | Last Changed Rev: 34811 / Revision: 38965 | | Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/aroma.light.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'aroma.light/DESCRIPTION' ... OK
* this is package 'aroma.light' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'aroma.light' can be installed ... WARNING
Found the following significant warnings:
WARNING: found \itemize inside \value in file 'medianPolish.matrix.Rd'
WARNING: found \itemize inside \value in file 'medianPolish.matrix.Rd'
See 'E:/biocbld/bbs-2.3-bioc/meat/aroma.light.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
robustSmoothSpline.default : smooth.spline.fit: no visible binding for
global variable 'ns'
robustSmoothSpline.default : smooth.spline0: no visible binding for
global variable 'ipars'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating aroma.light-Ex.R ... OK
* checking examples ... OK
* creating aroma.light-manual.tex ... OK
* checking aroma.light-manual.tex using pdflatex ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.3-bioc/meat/aroma.light.Rcheck/00check.log
for details
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/aroma.light.Rcheck
---------- Making package aroma.light ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package aroma.light for lazy loading
Loading required package: R.methodsS3
R.methodsS3 v1.0.3 (2008-07-02) successfully loaded. See ?R.methodsS3 for help.
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'aroma.light'
Formats: text html latex example chm
1._Calibration_and_Normalization text html latex chm
Non-documented_objects text html latex chm
aroma.light-package text html latex chm
averageQuantile.list text html latex chm
backtransformAffine.matrix text html latex example chm
calibrateMultiscan.matrix text html latex example chm
distanceBetweenLines text html latex example chm
fitIWPCA.matrix text html latex chm
iwpca.matrix text html latex example chm
likelihood.smooth.spline text html latex example chm
WARNING: found \itemize inside \value in file 'medianPolish.matrix.Rd'
WARNING: found \itemize inside \value in file 'medianPolish.matrix.Rd'
medianPolish.matrix text html latex example chm
normalizeAffine.matrix text html latex example chm
normalizeAverage.matrix text html latex chm
normalizeCurveFit.matrix text html latex example chm
normalizeFragmentLength text html latex example chm
normalizeQuantileRank.list text html latex example chm
normalizeQuantileRank.matrix text html latex example chm
normalizeQuantileRank.numeric text html latex chm
normalizeQuantileSpline.list text html latex chm
normalizeQuantileSpline.matrix text html latex example chm
normalizeQuantileSpline.numeric text html latex chm
plotDensity.list text html latex chm
plotMvsA.matrix text html latex chm
plotMvsAPairs.matrix text html latex chm
plotMvsMPairs.matrix text html latex chm
plotXYCurve.matrix text html latex chm
plotXYCurve.numeric text html latex chm
print.SmoothSplineLikelihood text html latex chm
robustSmoothSpline text html latex example chm
sampleCorrelations.matrix text html latex example chm
sampleTuples text html latex example chm
weightedMedian text html latex example chm
wpca.matrix text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\aroma.light.Rcheck\00_pkg_src\aroma.light\chm\aroma.light.chm
Compile time: 0 minutes, 2 seconds
34 Topics
140 Local links
37 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\aroma.light.Rcheck\00_pkg_src\aroma.light\chm\aroma.light.chm, 96,362 bytes
Compression decreased file by 133,681 bytes.
adding MD5 sums
* DONE (aroma.light)