birta 1.8.0
Benedikt Zacher , Holger Froehlich
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/birta | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | [ OK ] |
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### Running command:
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### rm -rf birta.buildbin-libdir && mkdir birta.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh birta_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R birta.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=birta.buildbin-libdir birta_1.8.0.tar.gz'
>>>>>>>
* installing *source* package ‘birta’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c BayesNetwork.cpp -o BayesNetwork.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c BayesNetworkNC.cpp -o BayesNetworkNC.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c getStates.cpp -o getStates.o
getStates.cpp:259:13: warning: variable 'nreps' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if(c == 1) {
^˜˜˜˜˜
getStates.cpp:262:49: note: uninitialized use occurs here
Otf[c][i] = (double*) malloc(sizeof(double)*nreps);
^˜˜˜˜
getStates.cpp:259:10: note: remove the 'if' if its condition is always true
else if(c == 1) {
^˜˜˜˜˜˜˜˜˜˜
getStates.cpp:255:14: note: initialize the variable 'nreps' to silence this warning
int nreps;
^
= 0
getStates.cpp:228:12: warning: variable 'nreps' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if(c == 1) {
^˜˜˜˜˜
getStates.cpp:231:46: note: uninitialized use occurs here
O[c][i] = (double*) malloc(sizeof(double)*nreps);
^˜˜˜˜
getStates.cpp:228:9: note: remove the 'if' if its condition is always true
else if(c == 1) {
^˜˜˜˜˜˜˜˜˜˜
getStates.cpp:224:13: note: initialize the variable 'nreps' to silence this warning
int nreps;
^
= 0
getStates.cpp:201:13: warning: variable 'nreps' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
else if(c == 1) {
^˜˜˜˜˜
getStates.cpp:204:47: note: uninitialized use occurs here
A[c][i] = (double*) malloc(sizeof(double)*nreps);
^˜˜˜˜
getStates.cpp:201:10: note: remove the 'if' if its condition is always true
else if(c == 1) {
^˜˜˜˜˜˜˜˜˜˜
getStates.cpp:197:14: note: initialize the variable 'nreps' to silence this warning
int nreps;
^
= 0
3 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o birta.so BayesNetwork.o BayesNetworkNC.o getStates.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/birta.buildbin-libdir/birta/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (birta)
>>>>>>>
>>>>>>> FIXING LINKS FOR birta.buildbin-libdir/birta/libs//birta.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "birta.buildbin-libdir/birta/libs//birta.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "birta.buildbin-libdir/birta/libs//birta.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "birta.buildbin-libdir/birta/libs//birta.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "birta.buildbin-libdir/birta/libs//birta.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "birta.buildbin-libdir/birta/libs//birta.so"