rqubic 1.6.0
Jitao David Zhang
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/rqubic | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rqubic.buildbin-libdir rqubic_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'rqubic' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c bicluster.c -o bicluster.o
bicluster.c:58:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int threshold = ceil(components * tolerance);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
bicluster.c:136:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(arr_rows, nrow);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:136:24: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
AllocArray(arr_rows, nrow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:137:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(arr_rows_b, nrow);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:137:26: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
AllocArray(arr_rows_b, nrow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:139:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(colcand, ncol);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:139:23: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
AllocArray(colcand, ncol);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:160:23: warning: implicit conversion changes signedness: 'const int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(arr_rows_b, nrow, sizeof *arr_rows, compare_int);
˜˜˜˜˜ ^˜˜˜
bicluster.c:201:28: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
int stackSize = (size+1) * sizeof(int);
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
bicluster.c:201:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int stackSize = (size+1) * sizeof(int);
˜˜˜˜^˜ ˜
bicluster.c:202:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
struct dyStack *ds = malloc(stackSize);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
bicluster.c:230:13: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(el, n, sizeof *el, compare_block);
˜˜˜˜˜ ^
bicluster.c:278:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int btolerance = ceil(tolerance* block_rows);
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
bicluster.c:339:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int threshold = ceil(components * tolerance);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
bicluster.c:354:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
if (flag=ss) (*m_cnt)++;
˜˜˜˜^˜˜
bicluster.c:354:15: note: place parentheses around the assignment to silence this warning
if (flag=ss) (*m_cnt)++;
^
( )
bicluster.c:354:15: note: use '==' to turn this assignment into an equality comparison
if (flag=ss) (*m_cnt)++;
^
==
bicluster.c:401:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(dexp, nrow);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:401:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(dexp, nrow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:403:5: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(dexp[i], ncol);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:403:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(dexp[i], ncol);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:413:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(symbols, sigma);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:413:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(symbols, sigma);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:430:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(bb, allocated);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:430:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(bb, allocated);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:438:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(profile, ncol);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:438:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(profile, ncol);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:439:30: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
for (j = 0; j < ncol; j++) AllocArray(profile[j], sigma);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:439:53: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
for (j = 0; j < ncol; j++) AllocArray(profile[j], sigma);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:446:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(candidates, nrow);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:446:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(candidates, nrow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:490:26: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int cand_threshold = floor(mincol * tolerance);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
bicluster.c:521:5: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(colcand, ncol);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:521:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(colcand, ncol);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:531:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int tol_cnt = floor(cnt * tolerance);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
bicluster.c:610:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(output, n);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:610:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(output, n);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:621:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(blocks_rows_cnt, n);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:621:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(blocks_rows_cnt, n);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:622:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(blocks_cols_cnt, n);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:622:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(blocks_cols_cnt, n);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:623:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(blocks_rows, n);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:623:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(blocks_rows, n);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:624:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(blocks_cols, n);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:624:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(blocks_cols, n);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:652:7: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(blocks_rows[j], blocks_rows_cnt[j]);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:652:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(blocks_rows[j], blocks_rows_cnt[j]);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
bicluster.c:653:7: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(blocks_cols[j], blocks_cols_cnt[j]);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
bicluster.c:653:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(blocks_cols[j], blocks_cols_cnt[j]);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
47 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c discretize.c -o discretize.o
discretize.c:16:22: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
const size_t lhs = (int)index;
˜˜˜ ^˜˜˜˜˜˜˜˜˜
discretize.c:45:59: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
if (cntl>0 && value<=quantile_from_sorted_data(downs, cntl, dspace * (i+1))) return -i-1;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
discretize.c:46:57: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
if (cntu>0 && value>=quantile_from_sorted_data(ups, cntu,1.0-dspace*(i+1))) return i+1;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
discretize.c:77:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(ups, 0, ncol*sizeof(*ups));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
discretize.c:77:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(ups, 0, ncol*sizeof(*ups));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
discretize.c:78:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(downs, 0, ncol*sizeof(*downs));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
discretize.c:78:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(downs, 0, ncol*sizeof(*downs));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
discretize.c:86:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
qsort(rowdata, ncol, sizeof *rowdata, compare_continuous);
˜˜˜˜˜ ^˜˜˜
discretize.c:89:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
fhigh = quantile_from_sorted_data(rowdata, ncol, (1 - rq));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
discretize.c:90:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
flow = quantile_from_sorted_data(rowdata, ncol, rq);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
discretize.c:91:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
fmed = quantile_from_sorted_data(rowdata, ncol, 0.5);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
In file included from discretize.c:9:
./rqubic.h:60:20: warning: unused variable 'EDGELIST_ATT_NAME' [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^
./rqubic.h:61:20: warning: unused variable 'MINCOL_ATT_NAME' [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^
13 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c fib.c -o fib.o
fib.c:83:7: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
oa = a;
˜ ^
fib.c:675:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if ((h->fh_Dl = ceillog2(h->fh_n) + 1) < 8)
˜˜˜˜˜˜˜˜ ˜˜˜^˜˜˜
fib.c:679:39: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
sizeof *h->fh_cons * (h->fh_Dl + 1));
˜ ˜˜˜˜˜˜˜˜˜^˜˜
In file included from fib.c:35:
./rqubic.h:60:20: warning: unused variable 'EDGELIST_ATT_NAME' [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^
./rqubic.h:61:20: warning: unused variable 'MINCOL_ATT_NAME' [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c graph.c -o graph.o
graph.c:112:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(arr_c, nrow);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
graph.c:112:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(arr_c, nrow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
graph.c:114:5: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
AllocArray(arr_c[i], ncol);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:35:56: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
graph.c:114:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
AllocArray(arr_c[i], ncol);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
./rqubic.h:35:59: note: expanded from macro 'AllocArray'
#define AllocArray(pt, size) (pt = xmalloc(sizeof(*pt) * (size)))
^
graph.c:158:3: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
ReAllocArray(edge_list, rec_num);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./rqubic.h:36:63: note: expanded from macro 'ReAllocArray'
#define ReAllocArray(pt, size) (pt = xrealloc(pt, sizeof(*pt) * (size)))
˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
graph.c:158:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
ReAllocArray(edge_list, rec_num);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
./rqubic.h:36:66: note: expanded from macro 'ReAllocArray'
#define ReAllocArray(pt, size) (pt = xrealloc(pt, sizeof(*pt) * (size)))
^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c rqubic.c -o rqubic.o
rqubic.c:14:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
register void* value = malloc(size);
˜˜˜˜˜˜ ^˜˜˜
rqubic.c:23:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
register void* value = realloc(ptr, size);
˜˜˜˜˜˜˜ ^˜˜˜
In file included from rqubic.c:5:
./rqubic.h:60:20: warning: unused variable 'EDGELIST_ATT_NAME' [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^
./rqubic.h:61:20: warning: unused variable 'MINCOL_ATT_NAME' [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^
4 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o rqubic.so bicluster.o discretize.o fib.o graph.o rqubic.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/rqubic.buildbin-libdir/rqubic/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rqubic)
>>>>>>>
>>>>>>> FIXING LINKS FOR rqubic.buildbin-libdir/rqubic/libs//rqubic.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "rqubic.buildbin-libdir/rqubic/libs//rqubic.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "rqubic.buildbin-libdir/rqubic/libs//rqubic.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "rqubic.buildbin-libdir/rqubic/libs//rqubic.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "rqubic.buildbin-libdir/rqubic/libs//rqubic.so"