BioC 2.12: CHECK report for prebs on moscato2

Package: prebs

Version: 1.0.2

Command: rm -rf prebs.buildbin-libdir && mkdir prebs.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=prebs.buildbin-libdir prebs_1.0.2.tar.gz >prebs-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=prebs.buildbin-libdir --install="check:prebs-install.out" --force-multiarch --no-vignettes --timings prebs_1.0.2.tar.gz && mv prebs.buildbin-libdir/* prebs.Rcheck/ && rmdir prebs.buildbin-libdir

StartedAt: 2013-10-09 03:38:26 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 03:57:02 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 1116.6 seconds

RetCode: 0

Status: OK

CheckDir: prebs.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/prebs.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'prebs/DESCRIPTION' ... OK
* this is package 'prebs' version '1.0.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'prebs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Foreign function call with 'PACKAGE' argument in a different package:
  .Call("rma_c_complete_copy", ..., PACKAGE = "affy")
See the chapter 'System and foreign language interfaces' of the
'Writing R Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [466s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
calc_prebs 443.34  14.23  458.18
** running examples for arch 'x64' ... [457s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
calc_prebs 436.16  12.34  448.59
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/prebs.Rcheck/00check.log'
for details.

BioC 2.12: CHECK report for prebs on moscato2

Summary

Command output