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Package 382/671HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.24.0
Gustavo H. Esteves
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/maigesPack
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: maigesPack
Version: 1.24.0
Command: rm -rf maigesPack.buildbin-libdir && mkdir maigesPack.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh maigesPack_1.24.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R maigesPack.buildbin-libdir
StartedAt: 2013-05-01 12:36:05 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 12:36:18 -0700 (Wed, 01 May 2013)
EllapsedTime: 13.5 seconds
RetCode: 0
Status:  OK 
PackageFile: maigesPack_1.24.0.tgz
PackageFileSize: 1.2 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=maigesPack.buildbin-libdir maigesPack_1.24.0.tar.gz'
>>>>>>> 

* installing *source* package 'maigesPack' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c Minfo.c -o Minfo.o
Minfo.c:46:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    distance = (double *) R_alloc((n-1), sizeof(double));
                          ˜˜˜˜˜˜˜  ˜^˜
Minfo.c:47:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp = (double *) R_alloc(n, sizeof(double));
                     ˜˜˜˜˜˜˜ ^
Minfo.c:82:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp1 = (double *) R_alloc((*ns), sizeof(double));
                      ˜˜˜˜˜˜˜  ^˜˜
Minfo.c:83:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp2 = (double *) R_alloc((*ns), sizeof(double));
                      ˜˜˜˜˜˜˜  ^˜˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c bootstrapT.c -o bootstrapT.o
bootstrapT.c:18:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
    m1 = stats_mean(x1, n1);
         ˜˜˜˜˜˜˜˜˜˜     ^˜
bootstrapT.c:19:25: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
    m2 = stats_mean(x2, n2);
         ˜˜˜˜˜˜˜˜˜˜     ^˜
bootstrapT.c:20:29: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
    s1 = stats_variance(x1, n1);
         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^˜
bootstrapT.c:21:29: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
    s2 = stats_variance(x2, n2);
         ˜˜˜˜˜˜˜˜˜˜˜˜˜˜     ^˜
bootstrapT.c:43:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    resP = (int *) R_alloc((*ng), sizeof(int));
                   ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:44:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    meant = (double *) R_alloc((*ng), sizeof(double));
                       ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:45:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tstat = (double *) R_alloc((*ng), sizeof(double));
                       ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:46:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    m_obs1 = (double *) R_alloc((*ng), sizeof(double));
                        ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:47:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    m_obs2 = (double *) R_alloc((*ng), sizeof(double));
                        ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:48:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    new1 = (double *) R_alloc((*n1), sizeof(double));
                      ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:49:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    new2 = (double *) R_alloc((*n2), sizeof(double));
                      ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:50:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp = (double *) R_alloc(nt, sizeof(double));
                     ˜˜˜˜˜˜˜ ^˜
bootstrapT.c:51:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp1 = (double *) R_alloc((*n1), sizeof(double));
                      ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:52:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp2 = (double *) R_alloc((*n2), sizeof(double));
                      ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:58:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    obs1B = (double **) R_alloc((*ng), sizeof(double));
                        ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:59:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    obs2B = (double **) R_alloc((*ng), sizeof(double));
                        ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:63:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        obs1B[i] = (double *) R_alloc((*n1), sizeof(double));
                              ˜˜˜˜˜˜˜  ^˜˜
bootstrapT.c:64:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
        obs2B[i] = (double *) R_alloc((*n2), sizeof(double));
                              ˜˜˜˜˜˜˜  ^˜˜
18 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c register.c -o register.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c robustCorr.c -o robustCorr.o
robustCorr.c:21:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    idx = (int *) R_alloc(n, sizeof(int));
                  ˜˜˜˜˜˜˜ ^
robustCorr.c:22:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp = (double *) R_alloc(n, sizeof(double));
                     ˜˜˜˜˜˜˜ ^
robustCorr.c:23:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp1 = (double *) R_alloc((n-1), sizeof(double));
                      ˜˜˜˜˜˜˜  ˜^˜
robustCorr.c:24:33: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp2 = (double *) R_alloc((n-1), sizeof(double));
                      ˜˜˜˜˜˜˜  ˜^˜
robustCorr.c:65:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp1 = (double *) R_alloc((*ns), sizeof(double));
                      ˜˜˜˜˜˜˜  ^˜˜
robustCorr.c:66:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
    tmp2 = (double *) R_alloc((*ns), sizeof(double));
                      ˜˜˜˜˜˜˜  ^˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c stats.c -o stats.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o maigesPack.so Minfo.o bootstrapT.o register.o robustCorr.o stats.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/maigesPack.buildbin-libdir/maigesPack/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (maigesPack)


>>>>>>> 
>>>>>>> FIXING LINKS FOR maigesPack.buildbin-libdir/maigesPack/libs//maigesPack.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "maigesPack.buildbin-libdir/maigesPack/libs//maigesPack.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "maigesPack.buildbin-libdir/maigesPack/libs//maigesPack.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "maigesPack.buildbin-libdir/maigesPack/libs//maigesPack.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "maigesPack.buildbin-libdir/maigesPack/libs//maigesPack.so"