BioC 2.12: CHECK report for KCsmart on moscato2

Package: KCsmart

Version: 2.18.0

Command: rm -rf KCsmart.buildbin-libdir && mkdir KCsmart.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KCsmart.buildbin-libdir KCsmart_2.18.0.tar.gz >KCsmart-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=KCsmart.buildbin-libdir --install="check:KCsmart-install.out" --force-multiarch --no-vignettes --timings KCsmart_2.18.0.tar.gz && mv KCsmart.buildbin-libdir/* KCsmart.Rcheck/ && rmdir KCsmart.buildbin-libdir

StartedAt: 2013-10-09 02:46:13 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 02:50:37 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 263.4 seconds

RetCode: 0

Status:  OK

CheckDir: KCsmart.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/KCsmart.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KCsmart/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KCsmart' version '2.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KCsmart' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [84s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
KCsmart-package      21.84   0.25   22.10
getSigRegionsCompKC  12.20   0.19   12.39
compareSpmCollection 11.86   0.12   11.98
calcSpmCollection    10.95   0.14   11.15
plotScaleSpace        6.24   0.00    6.52
** running examples for arch 'x64' ... [99s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
KCsmart-package      26.90   0.31   28.08
compareSpmCollection 15.47   0.06   15.54
getSigRegionsCompKC  13.92   0.04   13.95
calcSpmCollection    13.73   0.11   13.87
findSigLevelFdr       5.16   0.02    5.18
plotScaleSpace        5.03   0.00    5.04
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'KCsmart' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'write.table' from package 'utils' in package 'KCsmart'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'KCsmart' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KCsmart' as KCsmart_2.18.0.zip
* DONE (KCsmart)