Package: PGSEA

Version: 1.3.1

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check PGSEA_1.3.1.tar.gz

RetCode: 0

Time: 99.6 seconds

Status: OK

CheckDir: PGSEA.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/PGSEA.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-06-03 r41797)
* checking for file 'PGSEA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PGSEA' version '1.3.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PGSEA' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
go2smc: no visible binding for global variable 'GOTERM'
go2smc: no visible binding for global variable 'GOTERM'
go2smc: no visible binding for global variable 'GOALLENTREZID'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating PGSEA-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating PGSEA-manual.tex ... OK
* checking PGSEA-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/PGSEA.Rcheck


---------- Making package PGSEA ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'PGSEA'
     Formats: text html latex example chm 
  GOLUBmcs                          text    html    latex   example chm
  PGSEA                             text    html    latex   example chm
  VAImcs                            text    html    latex   example chm
  aggregateExprs                    text    html    latex   example chm
  convertSmc                        text    html    latex   example chm
  editSmc                           text    html    latex   example chm
  go2smc                            text    html    latex   example chm
  nbEset                            text    html    latex   example chm
  readGmt                           text    html    latex   example chm
  readSmc                           text    html    latex   example chm
  scanSmc                           text    html    latex   example chm
  smcPlot                           text    html    latex   example chm
  writeGmt                          text    html    latex   example chm
  writeSmc                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\PGSEA.Rcheck\00_pkg_src\PGSEA\chm\PGSEA.chm


Compile time: 0 minutes, 0 seconds
15	Topics
33	Local links
9	Internet links
1	Graphic


Created d:\biocbld\bbs-2.1-bioc\meat\PGSEA.Rcheck\00_pkg_src\PGSEA\chm\PGSEA.chm, 28,874 bytes
Compression decreased file by 10,214 bytes.
  adding MD5 sums

* DONE (PGSEA)