Package: applera

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check applera_1.5.0.tar.gz

RetCode: 0

Time: 82.9 seconds

Status: WARNINGS

CheckDir: applera.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/Users/biocbuild/2.0d/Rpacks/applera.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-10-21 r39702)
* checking for file 'applera/DESCRIPTION' ... OK
* this is package 'applera' version '1.5.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'applera' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating applera-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignettes without corresponding PDF:
  /Users/biocbuild/2.0d/Rpacks/applera.Rcheck/00_pkg_src/applera/inst/doc/applera.Rnw
* creating applera-manual.tex ... OK
* checking applera-manual.tex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/2.0d/Rpacks/applera.Rcheck/00check.log
for details

* Installing *source* package 'applera' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: limma
Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: RColorBrewer
Loading required package: prada
Loading required package: grid
Scalable Robust Estimators with High Breakdown Point (version 0.3-04)
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

** help
 >>> Building/Updating help pages for package 'applera'
     Formats: text html latex example 
  CATPlots                          text    html    latex   example
  applera                           text    html    latex   example
  optFilter                         text    html    latex   example
  readAp                            text    html    latex   example
  test                              text    html    latex   example
** building package indices ...
* DONE (applera)