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Package 201/205OSArchBUILDCHECKBUILD BIN

webbioc

1.5.0

Colin A. Smith		Linux (SUSE 9.2) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 OK  WARNINGS 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK [ WARNINGS ]
Windows Server 2003 x86_64 OK  WARNINGS  OK 
Windows XP i686 OK  WARNINGS skipped
Mac OS X (10.4.6) i686 OK  WARNINGS 
Package: webbioc
Version: 1.5.0
Command: /home/biocbuild/1.9d/R/bin/R CMD check webbioc_1.5.0.tar.gz
RetCode: 0
Time: 29.9 seconds
Status: WARNINGS
CheckDir: webbioc.Rcheck
Warnings: 1

Command output

* checking for working latex ... OK
* using log directory '/home/biocbuild/1.9d/Rpacks/webbioc.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'webbioc/DESCRIPTION' ... OK
* this is package 'webbioc' version '1.5.0'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  modreg
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'webbioc' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating webbioc-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating webbioc-manual.tex ... OK
* checking webbioc-manual.tex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/1.9d/Rpacks/webbioc.Rcheck/00check.log
for details

webbioc.Rcheck/00install.out:

* Installing *source* package 'webbioc' ...
** R
** inst
** save image
Loading required package: affy

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio

Loading required package: multtest

Loading required package: survival

Loading required package: splines

Loading required package: annaffy

Loading required package: GO

Loading required package: KEGG

Loading required package: vsn

Loading required package: gcrma

Loading required package: matchprobes

Loading required package: reposTools

[1] FALSE
Warning message:
there is no package called 'reposTools' in: library(package, lib.loc = lib.loc, character.only = TRUE, logical = TRUE,  
** help
 >>> Building/Updating help pages for package 'webbioc'
     Formats: text html latex example 
  installReps                       text    html    latex
  mt.wrapper                        text    html    latex
  qplot                             text    html    latex
  qvalue                            text    html    latex
  qwrite                            text    html    latex
** building package indices ...
* DONE (webbioc)