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| Package: arrayMagic |
| Version: 1.10.0 |
| Command: D:\biocbld\R-2.3.0\bin\R.exe CMD build arrayMagic |
| RetCode: 0 |
| Time: 162.0 seconds |
| Status: OK |
| PackageFile: arrayMagic_1.10.0.tar.gz |
* checking for file 'arrayMagic/DESCRIPTION' ... OK
* preparing 'arrayMagic':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/work-area/1.8d/tmpdir/Rinst591262631
---------- Making package arrayMagic ------------
adding build stamp to DESCRIPTION
installing R files
save image
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: vsn
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
[1] "arrayData"
[1] "initialize"
[1] "weights<-"
[1] "weights<-"
[1] "intensities<-"
[1] "intensities<-"
[1] "spotAttr<-"
[1] "spotAttr<-"
[1] "hybAttrList<-"
[1] "hybAttrList<-"
[1] "getIntensities"
[1] "getIntensities"
[1] "getWeights"
[1] "getWeights"
[1] "getSpotAttr"
[1] "getSpotAttr"
[1] "getHybAttrList"
[1] "getHybAttrList"
[1] "getHybAttr"
[1] "getHybAttr"
[1] "getHybAttrRed"
[1] "getHybAttrRed"
[1] "getHybAttrGreen"
[1] "getHybAttrGreen"
[1] "["
[1] "as.RGList"
[1] "as.RGList"
[1] "show"
[1] "exprSetRG"
[1] "initialize"
[1] "show"
[1] "as.exprSet"
[1] "as.exprSet"
[1] "as.RGList"
[1] "getIndGreen"
[1] "getIndGreen"
[1] "getExprSetGreen"
[1] "getExprSetGreen"
[1] "getIndRed"
[1] "getIndRed"
[1] "getExprSetRed"
[1] "getExprSetRed"
[1] "getExprSetLogRatio"
[1] "getExprSetLogRatio"
[1] "getExprSetGreenMinusRed"
[1] "getExprSetGreenMinusRed"
[1] "getExprSetRedMinusGreen"
[1] "getExprSetRedMinusGreen"
[1] "phenoDataGreen"
[1] "phenoDataGreen"
[1] "pDataGreen"
[1] "pDataGreen"
[1] "phenoDataRed"
[1] "phenoDataRed"
[1] "pDataRed"
[1] "pDataRed"
[1] "phenoDataSlide"
[1] "phenoDataSlide"
[1] "pDataSlide"
[1] "pDataSlide"
[1] "slideSubset"
[1] "slideSubset"
[1] "["
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'arrayMagic'
Formats: text html latex example chm
arrayData-class text html latex example chm
cbind.arrayData text html latex example chm
cbind.exprSetRG text html latex example chm
colCors text html latex example chm
controlledApply text html latex example chm
controlledSubsetting text html latex example chm
detectReplicas text html latex example chm
exprSetRG-class text html latex example chm
fdc text html latex example chm
interweave text html latex example chm
normalise text html latex example chm
plot.imageMatrix text html latex example chm
plotDistributions text html latex example chm
processArrayData text html latex example chm
processArrayDataObject text html latex example chm
qualityDiagnostics text html latex example chm
qualityParameters text html latex example chm
readIntensities text html latex example chm
readpDataSlides text html latex example chm
removeSpots text html latex example chm
simpleApply text html latex example chm
slideMerge text html latex example chm
spatialLayout text html latex example chm
spotMerge text html latex example chm
visualiseHybridisations text html latex example chm
visualiseQualityParameters text html latex example chm
write.htmltable text html latex example chm
writeToFile text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\work-area\1.8d\madman\Rpacks\arrayMagic\chm\arrayMagic.chm
Compile time: 0 minutes, 0 seconds
29 Topics
247 Local links
1 Internet link
1 Graphic
Created d:\biocbld\work-area\1.8d\madman\Rpacks\arrayMagic\chm\arrayMagic.chm, 71,601 bytes
Compression decreased file by 99,622 bytes.
adding MD5 sums
* DONE (arrayMagic)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'arrayMagic_1.10.0.tar.gz'